Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc06g035940.2.1 | Tomato | nucleus | 74.33 | 73.67 |
| PGSC0003DMT400092271 | Potato | nucleus | 20.9 | 52.83 |
| PGSC0003DMT400086035 | Potato | nucleus | 49.25 | 50.23 |
| PGSC0003DMT400076898 | Potato | cytosol | 35.67 | 48.28 |
| PGSC0003DMT400080861 | Potato | nucleus | 32.84 | 47.93 |
| PGSC0003DMT400042908 | Potato | nucleus | 34.18 | 45.98 |
| PGSC0003DMT400062468 | Potato | cytosol | 24.03 | 45.1 |
| PGSC0003DMT400062470 | Potato | cytosol, nucleus, plastid | 20.45 | 45.07 |
| PGSC0003DMT400095329 | Potato | cytosol | 17.76 | 43.12 |
| PGSC0003DMT400028197 | Potato | cytosol | 21.34 | 42.94 |
| PGSC0003DMT400028195 | Potato | nucleus | 22.54 | 39.63 |
| KRH35356 | Soybean | nucleus | 42.24 | 36.99 |
| KRG91457 | Soybean | nucleus | 42.24 | 36.42 |
| CDX89415 | Canola | cytosol, mitochondrion | 9.25 | 34.83 |
| PGSC0003DMT400071377 | Potato | nucleus | 42.54 | 34.71 |
| PGSC0003DMT400037055 | Potato | nucleus | 41.34 | 34.11 |
| PGSC0003DMT400019986 | Potato | nucleus | 40.75 | 33.75 |
| KRH38560 | Soybean | nucleus | 38.96 | 33.63 |
| Bra028295.1-P | Field mustard | nucleus | 34.03 | 33.43 |
| CDY31916 | Canola | nucleus | 33.43 | 33.28 |
| CDY00515 | Canola | nucleus | 33.28 | 33.14 |
| KRH09109 | Soybean | plastid | 38.06 | 32.9 |
| PGSC0003DMT400061859 | Potato | nucleus | 33.73 | 32.8 |
| PGSC0003DMT400029291 | Potato | nucleus | 32.99 | 31.71 |
| PGSC0003DMT400005277 | Potato | nucleus | 34.03 | 31.11 |
| PGSC0003DMT400069312 | Potato | nucleus | 32.39 | 30.35 |
| PGSC0003DMT400048971 | Potato | nucleus | 25.37 | 29.93 |
| PGSC0003DMT400094124 | Potato | nucleus | 32.69 | 28.97 |
| PGSC0003DMT400006770 | Potato | nucleus | 30.3 | 26.3 |
| PGSC0003DMT400006155 | Potato | nucleus | 29.55 | 25.92 |
| CDX89416 | Canola | nucleus | 23.43 | 24.19 |
| Bra013898.1-P | Field mustard | nucleus | 22.39 | 24.08 |
| CDX94443 | Canola | cytosol | 22.54 | 24.04 |
| PGSC0003DMT400034503 | Potato | cytosol, nucleus | 22.39 | 22.03 |
| PGSC0003DMT400037397 | Potato | cytosol | 15.97 | 21.79 |
| PGSC0003DMT400085057 | Potato | cytosol | 15.37 | 21.55 |
| PGSC0003DMT400095083 | Potato | cytosol | 3.88 | 21.49 |
| VIT_13s0067g01580.t01 | Wine grape | nucleus | 3.58 | 21.43 |
| CDY39874 | Canola | plasma membrane | 5.97 | 20.83 |
| PGSC0003DMT400051268 | Potato | cytosol | 15.37 | 20.64 |
| PGSC0003DMT400036411 | Potato | nucleus | 15.97 | 20.38 |
| AT5G07260.1 | Thale cress | cytosol | 16.42 | 20.33 |
| PGSC0003DMT400038820 | Potato | extracellular | 10.75 | 19.78 |
| PGSC0003DMT400033830 | Potato | endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 9.55 | 18.18 |
| PGSC0003DMT400051266 | Potato | cytosol | 9.85 | 16.97 |
| AT4G26920.1 | Thale cress | cytosol, plasma membrane, plastid | 11.64 | 16.92 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.3 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0008289 |
| InterPro:Homeobox-like_sf | InterPro:Homeobox_dom | InterPro:IPR001356 | InterPro:IPR002913 | UniProt:M1CXK4 | PFAM:PF00046 |
| PFAM:PF01852 | EnsemblPlantsGene:PGSC0003DMG400029914 | PGSC:PGSC0003DMG400029914 | EnsemblPlants:PGSC0003DMT400076902 | PFscan:PS50071 | PFscan:PS50848 |
| PANTHER:PTHR24326 | PANTHER:PTHR24326:SF320 | SMART:SM00389 | SUPFAM:SSF46689 | SUPFAM:SSF55961 | InterPro:START_lipid-bd_dom |
| UniParc:UPI000295A6A6 | SEG:seg | : | : | : | : |
Description
Homeobox protein [Source:PGSC_GENE;Acc:PGSC0003DMG400029914]
Coordinates
chr6:+:37327895..37332021
Molecular Weight (calculated)
74954.4 Da
IEP (calculated)
4.907
GRAVY (calculated)
-0.303
Length
670 amino acids
Sequence
(BLAST)
(BLAST)
001: MDDHNDTTET TERRECLVNL MIRGPREDQN EDTFVTNNRD GGASGDELNS PHGISSKRHK YSDNQIQELE AVFKENSHPD EKTRLELATK FSVGKKQVQF
101: WFQNKRSISK TQLERHDKKI LQQENEKLCL EYAAMKEVME NSICDPCRNK DTIRKENIDE KEILNEHARL KNELARIAIH ADNFLGPSTF LEGSLTSMMK
201: NFGLELLTGR DETSDVNVVD GLSLNEVDFG KYLSSPPPTN LVNKDLTLDK SMLLNLALAA LNELLKLAMS DKPFWVRSLD GGGEILNMEE YARSFISITG
301: IKPSHFTTEA TRSSGTVAGN SLTLVEMLMN ESQWVEVFPC IIGKVNTFDV ISTGIGESKS GTLLLVIWIE HMEYDEIFVH HLYRPLIRVG LGFGAQRWIS
401: SFQRQSEFLR VMASFVDSTV DSKGEIGMGI LAQRMTRNFC AGICATSHKW KTIQIENEKD ANLMMRKNIS DPGEPIGVVL SATKTIQLPI KPQCLFEFFT
501: NNNMRIQWDI LSCSGPMKNI IHITKGQNLE SCVSLLCANG DDIIANQNNM LIFQDTCTDA TGSLLVYAIV DSSQMNIVMK GGDSSCVELL PDGISIVPDL
601: SQDYYANNND GGNNNEFCSG SLVTIMFQMF VGNLSTTDLL EKSIIDANDI ISHTIHIRSK LLSNASDSSR
101: WFQNKRSISK TQLERHDKKI LQQENEKLCL EYAAMKEVME NSICDPCRNK DTIRKENIDE KEILNEHARL KNELARIAIH ADNFLGPSTF LEGSLTSMMK
201: NFGLELLTGR DETSDVNVVD GLSLNEVDFG KYLSSPPPTN LVNKDLTLDK SMLLNLALAA LNELLKLAMS DKPFWVRSLD GGGEILNMEE YARSFISITG
301: IKPSHFTTEA TRSSGTVAGN SLTLVEMLMN ESQWVEVFPC IIGKVNTFDV ISTGIGESKS GTLLLVIWIE HMEYDEIFVH HLYRPLIRVG LGFGAQRWIS
401: SFQRQSEFLR VMASFVDSTV DSKGEIGMGI LAQRMTRNFC AGICATSHKW KTIQIENEKD ANLMMRKNIS DPGEPIGVVL SATKTIQLPI KPQCLFEFFT
501: NNNMRIQWDI LSCSGPMKNI IHITKGQNLE SCVSLLCANG DDIIANQNNM LIFQDTCTDA TGSLLVYAIV DSSQMNIVMK GGDSSCVELL PDGISIVPDL
601: SQDYYANNND GGNNNEFCSG SLVTIMFQMF VGNLSTTDLL EKSIIDANDI ISHTIHIRSK LLSNASDSSR
001: MEFLGDSQNH DSSETEKKNK KKKRFHRHTP HQIQRLESTF NECQHPDEKQ RNQLSRELGL APRQIKFWFQ NRRTQKKAQH ERADNCALKE ENDKIRCENI
101: AIREAIKHAI CPSCGDSPVN EDSYFDEQKL RIENAQLRDE LERVSSIAAK FLGRPISHLP PLLNPMHVSP LELFHTGPSL DFDLLPGSCS SMSVPSLPSQ
201: PNLVLSEMDK SLMTNIAVTA MEELLRLLQT NEPLWIKTDG CRDVLNLENY ENMFTRSSTS GGKKNNLGME ASRSSGVVFT NAITLVDMLM NSVKLTELFP
301: SIVASSKTLA VISSGLRGNH GDALHLMIEE LQVLSPLVTT REFCVLRYCQ QIEHGTWAIV NVSYEFPQFI SQSRSYRFPS GCLIQDMSNG YSKVTWVEHG
401: EFEEQEPIHE MFKDIVHKGL AFGAERWIAT LQRMCERFTN LLEPATSSLD LGGVIPSPEG KRSIMRLAHR MVSNFCLSVG TSNNTRSTVV SGLDEFGIRV
501: TSHKSRHEPN GMVLCAATSF WLPISPQNVF NFLKDERTRP QWDVLSNGNS VQEVAHITNG SNPGNCISVL RGFNASSSQN NMLILQESCI DSSSAALVIY
601: TPVDLPALNI AMSGQDTSYI PILPSGFAIS PDGSSKGGGS LITVGFQIMV SGLQPAKLNM ESMETVNNLI NTTVHQIKTT LNCPSTA
101: AIREAIKHAI CPSCGDSPVN EDSYFDEQKL RIENAQLRDE LERVSSIAAK FLGRPISHLP PLLNPMHVSP LELFHTGPSL DFDLLPGSCS SMSVPSLPSQ
201: PNLVLSEMDK SLMTNIAVTA MEELLRLLQT NEPLWIKTDG CRDVLNLENY ENMFTRSSTS GGKKNNLGME ASRSSGVVFT NAITLVDMLM NSVKLTELFP
301: SIVASSKTLA VISSGLRGNH GDALHLMIEE LQVLSPLVTT REFCVLRYCQ QIEHGTWAIV NVSYEFPQFI SQSRSYRFPS GCLIQDMSNG YSKVTWVEHG
401: EFEEQEPIHE MFKDIVHKGL AFGAERWIAT LQRMCERFTN LLEPATSSLD LGGVIPSPEG KRSIMRLAHR MVSNFCLSVG TSNNTRSTVV SGLDEFGIRV
501: TSHKSRHEPN GMVLCAATSF WLPISPQNVF NFLKDERTRP QWDVLSNGNS VQEVAHITNG SNPGNCISVL RGFNASSSQN NMLILQESCI DSSSAALVIY
601: TPVDLPALNI AMSGQDTSYI PILPSGFAIS PDGSSKGGGS LITVGFQIMV SGLQPAKLNM ESMETVNNLI NTTVHQIKTT LNCPSTA
Arabidopsis Description
HDG12Uncharacterized protein At1g17920 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SUW2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.