Factsheet for PGSC0003DMT400037055

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g026070.2.1	Tomato	nucleus	90.27	90.83
KRH35356	Soybean	nucleus	50.0	53.07
PGSC0003DMT400071377	Potato	nucleus	53.45	52.86
KRG91457	Soybean	nucleus	50.12	52.38
PGSC0003DMT400019986	Potato	nucleus	49.75	49.94
KRH38560	Soybean	nucleus	46.8	48.97
KRH09109	Soybean	plastid	46.18	48.39
PGSC0003DMT400062470	Potato	cytosol, nucleus, plastid	17.73	47.37
PGSC0003DMT400061859	Potato	nucleus	39.9	47.02
PGSC0003DMT400029291	Potato	nucleus	40.15	46.77
CDY00515	Canola	nucleus	38.42	46.36
CDY31916	Canola	nucleus	38.3	46.21
Bra028295.1-P	Field mustard	nucleus	38.67	46.04
PGSC0003DMT400092271	Potato	nucleus	15.02	46.04
PGSC0003DMT400042908	Potato	nucleus	27.83	45.38
PGSC0003DMT400086035	Potato	nucleus	36.7	45.36
PGSC0003DMT400076898	Potato	cytosol	27.59	45.25
PGSC0003DMT400080861	Potato	nucleus	25.49	45.1
PGSC0003DMT400028195	Potato	nucleus	21.06	44.88
PGSC0003DMT400005277	Potato	nucleus	39.9	44.2
PGSC0003DMT400062468	Potato	cytosol	18.6	42.3
PGSC0003DMT400028197	Potato	cytosol	17.12	41.74
PGSC0003DMT400076902	Potato	nucleus	34.11	41.34
PGSC0003DMT400095329	Potato	cytosol	13.79	40.58
VIT_13s0067g01580.t01	Wine grape	nucleus	5.54	40.18
PGSC0003DMT400069312	Potato	nucleus	34.98	39.72
PGSC0003DMT400048971	Potato	nucleus	27.46	39.26
PGSC0003DMT400094124	Potato	nucleus	35.71	38.36
CDX89415	Canola	cytosol, mitochondrion	8.25	37.64
PGSC0003DMT400006155	Potato	nucleus	35.22	37.43
CDY39874	Canola	plasma membrane	8.74	36.98
PGSC0003DMT400095083	Potato	cytosol	5.42	36.36
PGSC0003DMT400006770	Potato	nucleus	34.36	36.14
PGSC0003DMT400033830	Potato	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	14.78	34.09
Bra013898.1-P	Field mustard	nucleus	25.0	32.58
CDX89416	Canola	nucleus	25.62	32.05
CDX94443	Canola	cytosol	24.26	31.37
PGSC0003DMT400085057	Potato	cytosol	17.98	30.54
PGSC0003DMT400034503	Potato	cytosol, nucleus	25.37	30.25
PGSC0003DMT400051268	Potato	cytosol	18.23	29.66
PGSC0003DMT400038820	Potato	extracellular	12.93	28.85
PGSC0003DMT400037397	Potato	cytosol	16.75	27.7
PGSC0003DMT400036411	Potato	nucleus	17.86	27.62
AT5G07260.1	Thale cress	cytosol	18.35	27.54
PGSC0003DMT400051266	Potato	cytosol	12.19	25.45
AT4G26920.1	Thale cress	cytosol, plasma membrane, plastid	13.55	23.86

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:102579878	MapMan:15.5.3.3	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0008289	InterPro:Homeobox-like_sf	InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:IPR002913	UniProt:M1B4R1
PFAM:PF00046	PFAM:PF01852	EnsemblPlantsGene:PGSC0003DMG400014279	PGSC:PGSC0003DMG400014279	EnsemblPlants:PGSC0003DMT400037055	PFscan:PS50071
PFscan:PS50848	PANTHER:PTHR24326	PANTHER:PTHR24326:SF350	SMART:SM00234	SMART:SM00389	SUPFAM:SSF46689
SUPFAM:SSF55961	InterPro:START_lipid-bd_dom	UniParc:UPI0002952501	RefSeq:XP_006353342.1	SEG:seg	:

Description

Homeobox protein [Source:PGSC_GENE;Acc:PGSC0003DMG400014279]

Coordinates

chr3:+:42464543..42469363

Molecular Weight (calculated)

88083.8 Da

IEP (calculated)

6.506

GRAVY (calculated)

-0.230

Length

812 amino acids

Sequence
(BLAST)

001: MSFGGFIGSS SGGNGGSGVS RLVGDSSYEA MPTATMAQSQ LITSSLSHSM FNSSPLSLAL KPKMEGAGDL SFDAAAVMGR NSRDDEYESR SGTGSDNLDG
101: VGSGDEMETH IGSSSKSAKK YHRHTPYQIQ ELEACFKENP HPDEKARLEL GKRLTLESRQ VKFWFQNRRT QMKTQMERHE NSMLKQENDK LRIENIAMKD
201: AMRSPACPHC GGQAILGEIH IEEHHLKIEN ARLRDEYNRI CVVANKFLGR PSESFHGPMS AGMANSGLEL AVGRNGYGAM NSVDTALPMG LNFGNNFSSA
301: LPAISPRPTL SMAGVGVSCD KNMLMELAFA SMNELIKLAD IGAPLWLRNF DGSAEELNLE EYARSFPPCI GRKPAHFSAE ATKATGTVMM NSLALVESLM
401: DTSRWMDIFS CIVGRTSTIN VISNSSGGSK DGNLHLIQAE FQVLSALVPV RKVKYLRFCK QHAEGVWVVV DVSIDAIQEG SIPLDGNCRR LPSGCIVQDL
501: PNGCSKVIWI EHTEYDESIT HNYYHPYIRS GLGFGAQRWI ATLQRQCEFL AIMSSAVPSG DNSVVSSSGR RSIAVLARRV TRSFCVGVCA TYYDWESIQS
601: GTAEESKLIM RKGVGEPGDP NGMVLSASRS LWLPVTHQRL FDFLRNEQTR SQWDVLSQGG SVHPIVHIGK GQDLGNSITL FRTSVANSDG SQNSMLTLQE
701: SCTDVSGSII AYTSLNSGDM NVVMSGGDSS CVTFLPSGFA IIPDCYENSN GVAAGNGILE NGGKINGCLL TMGFQILMTN PPTGTLTMDS VNTVNSLITR
801: TVQNIKLAFQ CN

Best Arabidopsis Sequence Match ( AT3G61150.1 )
(BLAST)

001: MNFNGFLDDG AGASKLLSDA PYNNHFSFSA VDTMLGSAAI APSQSLPFSS SGLSLGLQTN GEMSRNGEIM ESNVSRKSSR GEDVESRSES DNAEAVSGDD
101: LDTSDRPLKK KKRYHRHTPK QIQDLESVFK ECAHPDEKQR LDLSRRLNLD PRQVKFWFQN RRTQMKTQIE RHENALLRQE NDKLRAENMS VREAMRNPMC
201: GNCGGPAVIG EISMEEQHLR IENSRLKDEL DRVCALTGKF LGRSNGSHHI PDSALVLGVG VGSGGCNVGG GFTLSSPLLP QASPRFEISN GTGSGLVATV
301: NRQQPVSVSD FDQRSRYLDL ALAAMDELVK MAQTREPLWV RSSDSGFEVL NQEEYDTSFS RCVGPKQDGF VSEASKEAGT VIINSLALVE TLMDSERWAE
401: MFPSMVSRTS TTEIISSGMG GRNGALHLMH AELQLLSPLV PVRQVSFLRF CKQHAEGVWA VVDVSIDSIR EGSSSSCRRL PSGCLVQDMA NGYSKVTWIE
501: HTEYDENHIH RLYRPLLRCG LAFGAHRWMA ALQRQCECLT ILMSSTVSTS TNPSPINCNG RKSMLKLAKR MTDNFCGGVC ASSLQKWSKL NVGNVDEDVR
601: IMTRKSVNNP GEPPGIILNA ATSVWMPVSP RRLFDFLGNE RLRSEWDILS NGGPMKEMAH IAKGHDRSNS VSLLRASAIN ANQSSMLILQ ETSIDAAGAV
701: VVYAPVDIPA MQAVMNGGDS AYVALLPSGF AILPNGQAGT QRCAAEERNS IGNGGCMEEG GSLLTVAFQI LVNSLPTAKL TVESVETVNN LISCTVQKIK
801: AALHCDST

Arabidopsis Description

HDG1HDG1 [Source:UniProtKB/TrEMBL;Acc:A0A178V5Q4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.