Factsheet for Bra028295.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY00515	Canola	nucleus	97.8	99.11
AT5G52170.2	Thale cress	nucleus	78.59	78.02
Bra000960.1-P	Field mustard	extracellular	10.41	60.68
KRH35356	Soybean	nucleus	54.99	49.02
KRG91457	Soybean	nucleus	54.99	48.26
VIT_16s0100g00670.t01	Wine grape	nucleus	53.08	46.23
Bra037355.1-P	Field mustard	nucleus	52.93	45.7
Bra000807.1-P	Field mustard	nucleus	39.74	45.39
Bra003439.1-P	Field mustard	nucleus	51.91	45.1
KRH38560	Soybean	nucleus	51.03	44.85
Bra004934.1-P	Field mustard	nucleus	51.17	44.4
KRH09109	Soybean	plastid	49.85	43.87
Bra029527.1-P	Field mustard	nucleus	47.21	43.22
Bra020872.1-P	Field mustard	nucleus	45.89	41.84
Bra038757.1-P	Field mustard	nucleus	44.28	41.66
PGSC0003DMT400062470	Potato	cytosol, nucleus, plastid	18.48	41.45
Bra015401.1-P	Field mustard	nucleus	43.7	41.39
Bra032478.1-P	Field mustard	nucleus	43.26	41.03
Bra003846.1-P	Field mustard	nucleus	40.32	39.01
Bra016578.1-P	Field mustard	nucleus	39.0	38.89
PGSC0003DMT400037055	Potato	nucleus	46.04	38.67
Solyc03g026070.2.1	Tomato	nucleus	45.45	38.41
Bra013556.1-P	Field mustard	nucleus	38.71	38.26
Bra015996.1-P	Field mustard	nucleus	40.18	38.21
PGSC0003DMT400042908	Potato	nucleus	27.71	37.95
Bra025938.1-P	Field mustard	nucleus	38.42	37.75
PGSC0003DMT400076898	Potato	cytosol	26.98	37.17
PGSC0003DMT400062468	Potato	cytosol	19.35	36.97
PGSC0003DMT400086035	Potato	nucleus	35.48	36.83
PGSC0003DMT400080861	Potato	nucleus	24.78	36.82
Solyc06g035940.2.1	Tomato	nucleus	36.36	36.69
Bra013898.1-P	Field mustard	nucleus	32.55	35.63
Bra005588.1-P	Field mustard	nucleus	36.66	35.51
Bra021779.1-P	Field mustard	nucleus	37.68	35.3
PGSC0003DMT400028195	Potato	nucleus	19.65	35.17
PGSC0003DMT400028197	Potato	cytosol	17.16	35.14
Solyc06g050160.2.1	Tomato	nucleus	32.99	34.46
Bra003535.1-P	Field mustard	nucleus	37.68	34.27
PGSC0003DMT400076902	Potato	nucleus	33.43	34.03
PGSC0003DMT400092271	Potato	nucleus	12.61	32.45
Bra023611.1-P	Field mustard	nucleus	32.84	31.77
Bra021035.1-P	Field mustard	nucleus	33.14	30.79
Bra003213.1-P	Field mustard	nucleus	31.82	30.56
Bra008562.1-P	Field mustard	cytosol, nucleus, plastid	32.11	30.29
Bra017519.1-P	Field mustard	nucleus	36.07	30.15
Bra024984.1-P	Field mustard	nucleus	35.04	30.06
Bra032003.1-P	Field mustard	nucleus	30.35	30.04
Bra021363.1-P	Field mustard	nucleus	31.52	29.57
Bra020066.1-P	Field mustard	nucleus	29.18	29.18
Bra007562.1-P	Field mustard	endoplasmic reticulum, mitochondrion, plasma membrane, vacuole	7.77	18.53

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.3	EnsemblPlantsGene:Bra028295	EnsemblPlants:Bra028295.1	EnsemblPlants:Bra028295.1-P	ncoils:Coil
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0008289	InterPro:Homeobox-like_sf	InterPro:Homeobox_dom	InterPro:IPR001356
InterPro:IPR002913	UniProt:M4EHN0	PFAM:PF00046	PFAM:PF01852	PFscan:PS50071	PFscan:PS50848
PANTHER:PTHR24326	PANTHER:PTHR24326:SF350	SMART:SM00234	SMART:SM00389	SUPFAM:SSF46689	SUPFAM:SSF55961
InterPro:START_lipid-bd_dom	UniParc:UPI00025439CB	SEG:seg	:	:	:

Description

AT5G52170 (E=2e-197) HDG7 | HDG7 (HOMEODOMAIN GLABROUS 7); DNA binding / sequence-specific DNA binding / transcription factor

Coordinates

chrA01:-:18847319..18850298

Molecular Weight (calculated)

75432.9 Da

IEP (calculated)

7.207

GRAVY (calculated)

-0.394

Length

682 amino acids

Sequence
(BLAST)

001: MNGDFDISKG DDEFESDSFE AMSGDDDDKH EQRPKKKKKM SKYRRHTSYQ IQELESFFKV CPHPNEKQRL ELGSKLSLES KQIKFWFQNR RTQMKTQLER
101: HENAILRQEN EKLRVENGIL KEAMRSPPTC NNCGGAATPG NVSHDQQQLR MENAKLKYEL DKLCALANRF IGGSISLEQP SNGGVGSQDL SLGHGFTRGT
201: STFMDIAAVA MDELIRLAEV DNPLWTKCSK SERDSMKHDQ YTSIFAGSKH PGFAAEGSRE TGLVLINSST LVETLMDTNR WAEMFECIVA VASTVEVISN
301: GSGGSRNGAL LLMQAEFQVM SPLVPIRQLK FLRYCKQHGD GLWAVVDVSY DVNRESQDLK SYGGLKRLPS GCIIQDIGNG CSKVTWIEHS EYEGSHIHPL
401: YQQLLGSSVG LGATKWLATL QRRCESYTTL LSSQDQTGLP LAGTKSTLTL AQRMKRNFYS GITGSPIHKW EKLVAENVGQ ETRILTRKSL QPSGVVLSAA
501: TSMWLPVTQQ RLFEFLCDSK CRNQWDILCN GASMENMLLI PQRQSEGRCV SLLQHAGKHQ NESSMLILQE TWSDASGALV VYAPVDVPST NMVMSGGDSA
601: NVALLPSGFS ISPDGSSSWS DQIDKNGGLV NHESKGCLLT VGFQILVNSV PTTKLNMESV QTVNNLIACT IHKIKAALSI PA

Best Arabidopsis Sequence Match ( AT5G52170.1 )
(BLAST)

001: MNGDLEVDMS RGDFNPSFFL GKLKDDEFES RSLSDDSFDA MSGDEDKQEQ RPKKKKRKTK YHRHTSYQIQ ELESFFKECP HPNEKQRLEL GKKLTLESKQ
101: IKFWFQNRRT QMKTQLERHE NVILKQENEK LRLENSFLKE SMRGSLCIDC GGAVIPGEVS FEQHQLRIEN AKLKEELDRI CALANRFIGG SISLEQPSNG
201: GIGSQHLPIG HCVSGGTSLM FMDLAMEAMD ELLKLAELET SLWSSKSEKG SMNHFPGSRE TGLVLINSLA LVETLMDTNK WAEMFECIVA VASTLEVISN
301: GSDGSRNGSI LLMQAEFQVM SPLVPIKQKK FLRYCKQHGD GLWAVVDVSY DINRGNENLK SYGGSKMFPS GCIIQDIGNG CSKVTWIEHS EYEESHTHSL
401: YQPLLSSSVG LGATKWLATL QRQCESFTML LSSEDHTGLS HAGTKSILKL AQRMKLNFYS GITASCIHKW EKLLAENVGQ DTRILTRKSL EPSGIVLSAA
501: TSLWLPVTQQ RLFEFLCDGK CRNQWDILSN GASMENTLLV PKGQQEGSCV SLLRAAGNDQ NESSMLILQE TWNDVSGALV VYAPVDIPSM NTVMSGGDSA
601: YVALLPSGFS ILPDGSSSSS DQFDTDGGLV NQESKGCLLT VGFQILVNSL PTAKLNVESV ETVNNLIACT IHKIRAALRI PA

Arabidopsis Description

HDG7homeodomain GLABROUS 7 [Source:TAIR;Acc:AT5G52170]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.