Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, endoplasmic reticulum, vacuole, plasma membrane
Predictor Summary:
Predictor Summary:
- extracellular 3
- endoplasmic reticulum 4
- vacuole 4
- plasma membrane 4
- golgi 3
- nucleus 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra021035.1-P | |
| Bra025431.1-P | |
| Bra028174.1-P | |
| Bra028181.1-P | |
| Bra028406.1-P |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os06t0208100-00 | Rice | nucleus | 25.52 | 56.59 |
| TraesCSU01G150000.1 | Wheat | nucleus | 18.88 | 24.77 |
| TraesCSU01G244000.1 | Wheat | nucleus | 15.73 | 21.84 |
| CDX72984 | Canola | nucleus | 30.42 | 12.17 |
| Bra015996.1-P | Field mustard | nucleus | 30.42 | 12.13 |
| AT1G73360.1 | Thale cress | nucleus | 30.07 | 11.91 |
| Bra003846.1-P | Field mustard | nucleus | 28.32 | 11.49 |
| GSMUA_Achr6P05990_001 | Banana | nucleus | 24.13 | 11.44 |
| Bra000807.1-P | Field mustard | nucleus | 23.43 | 11.22 |
| KRH09477 | Soybean | nucleus | 27.97 | 11.14 |
| KRH41898 | Soybean | nucleus | 27.97 | 11.1 |
| KRH38939 | Soybean | nucleus | 27.97 | 11.08 |
| KRH60596 | Soybean | nucleus | 27.62 | 11.08 |
| VIT_17s0053g00780.t01 | Wine grape | nucleus | 27.27 | 10.99 |
| Bra016578.1-P | Field mustard | nucleus | 26.22 | 10.96 |
| Solyc03g098200.2.1 | Tomato | nucleus | 26.57 | 10.54 |
| Bra025938.1-P | Field mustard | nucleus | 25.52 | 10.52 |
| TraesCS6D01G304300.1 | Wheat | nucleus | 25.17 | 10.51 |
| TraesCS6A01G324500.1 | Wheat | nucleus | 25.17 | 10.51 |
| PGSC0003DMT400069312 | Potato | nucleus | 25.87 | 10.35 |
| TraesCS6B01G354900.3 | Wheat | nucleus | 25.17 | 10.33 |
| Solyc06g072310.2.1 | Tomato | nucleus | 25.87 | 10.32 |
| Zm00001d052133_P001 | Maize | nucleus | 24.83 | 10.17 |
| GSMUA_Achr10P... | Banana | nucleus | 25.17 | 10.13 |
| Zm00001d018225_P001 | Maize | nucleus | 24.48 | 10.12 |
| Zm00001d037140_P004 | Maize | nucleus | 24.13 | 10.04 |
| Zm00001d044973_P001 | Maize | nucleus | 24.13 | 10.01 |
| EER89393 | Sorghum | nucleus | 24.48 | 10.0 |
| EES05874 | Sorghum | nucleus | 24.48 | 9.9 |
| Bra013556.1-P | Field mustard | nucleus | 23.43 | 9.71 |
| TraesCS7A01G167900.1 | Wheat | nucleus | 24.48 | 9.66 |
| GSMUA_Achr2P15140_001 | Banana | nucleus | 24.83 | 9.61 |
| TraesCS7B01G072700.1 | Wheat | nucleus | 24.48 | 9.59 |
| TraesCS7D01G168700.1 | Wheat | nucleus | 24.48 | 9.56 |
| Bra032478.1-P | Field mustard | nucleus | 23.08 | 9.18 |
| GSMUA_Achr7P11310_001 | Banana | nucleus | 23.43 | 9.1 |
| GSMUA_Achr10P... | Banana | nucleus | 21.68 | 9.09 |
| Bra015401.1-P | Field mustard | nucleus | 22.73 | 9.03 |
| Bra029527.1-P | Field mustard | nucleus | 23.08 | 8.86 |
| Bra020872.1-P | Field mustard | nucleus | 23.08 | 8.82 |
| Bra003535.1-P | Field mustard | nucleus | 22.73 | 8.67 |
| Bra023611.1-P | Field mustard | nucleus | 20.28 | 8.23 |
| Bra003439.1-P | Field mustard | nucleus | 22.03 | 8.03 |
| Bra008562.1-P | Field mustard | cytosol, nucleus, plastid | 20.28 | 8.02 |
| Bra037355.1-P | Field mustard | nucleus | 22.03 | 7.97 |
| Bra005588.1-P | Field mustard | nucleus | 19.58 | 7.95 |
| Bra004934.1-P | Field mustard | nucleus | 21.68 | 7.89 |
| Bra028295.1-P | Field mustard | nucleus | 18.53 | 7.77 |
| Bra003213.1-P | Field mustard | nucleus | 19.23 | 7.75 |
| Bra021363.1-P | Field mustard | nucleus | 19.58 | 7.7 |
| Bra038757.1-P | Field mustard | nucleus | 19.23 | 7.59 |
| Bra021779.1-P | Field mustard | nucleus | 19.23 | 7.55 |
| Bra020066.1-P | Field mustard | nucleus | 17.83 | 7.48 |
| Bra024984.1-P | Field mustard | nucleus | 19.93 | 7.17 |
| Bra017519.1-P | Field mustard | nucleus | 20.28 | 7.11 |
| Bra032003.1-P | Field mustard | nucleus | 16.43 | 6.82 |
| Bra021035.1-P | Field mustard | nucleus | 15.73 | 6.13 |
| Bra013898.1-P | Field mustard | nucleus | 5.59 | 2.57 |
| Bra000960.1-P | Field mustard | extracellular | 0.0 | 0.0 |
| Os06t0207966-00 | Rice | plastid | 0.0 | 0.0 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.3 | EnsemblPlantsGene:Bra007562 | EnsemblPlants:Bra007562.1 | EnsemblPlants:Bra007562.1-P | ncoils:Coil |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0016020 | GO:GO:0016021 | InterPro:Homeobox-like_sf | InterPro:Homeobox_dom |
| InterPro:IPR001356 | UniProt:M4CTL8 | PFAM:PF00046 | PFscan:PS50071 | PANTHER:PTHR24326 | PANTHER:PTHR24326:SF236 |
| SMART:SM00389 | SUPFAM:SSF46689 | SignalP:SignalP-noTM | TMHMM:TMhelix | UniParc:UPI00025428D1 | SEG:seg |
Description
AT1G73360 (E=1e-048) HDG11, EDT1, ATHDG11 | HDG11 (HOMEODOMAIN GLABROUS 11); DNA binding / transcription factor
Coordinates
chrA09:-:29802068..29803448
Molecular Weight (calculated)
32965.1 Da
IEP (calculated)
9.133
GRAVY (calculated)
-0.258
Length
286 amino acids
Sequence
(BLAST)
(BLAST)
001: MANVLVFLST STVRVQLLLL VLTSQRRKII DGRLKPLLKE QFFVYCKFHV DSHKGDCNMY YLDCTNGELC SLCLAHHKDL LTIQSKCVLA IILISFFGWL
101: CYVVRFCLCI DWFWQIGRSL GLYRSISIAC HSSWIHNLTI FYPSSNQRIS TYKKGCLEKV IGGDSGGGSQ HHYGTETHRK KKRYHHHTAQ QIQRLESSFK
201: ECLHPDDKQR NQLSRELGLA PRQIKFRFQN IRTQLNAQHE RADNNALEAE KDKIRCENIA IREALKHAIC PNCGGPPVNA CLFQLN
101: CYVVRFCLCI DWFWQIGRSL GLYRSISIAC HSSWIHNLTI FYPSSNQRIS TYKKGCLEKV IGGDSGGGSQ HHYGTETHRK KKRYHHHTAQ QIQRLESSFK
201: ECLHPDDKQR NQLSRELGLA PRQIKFRFQN IRTQLNAQHE RADNNALEAE KDKIRCENIA IREALKHAIC PNCGGPPVNA CLFQLN
001: MEFLGDSQNH DSSETEKKNK KKKRFHRHTP HQIQRLESTF NECQHPDEKQ RNQLSRELGL APRQIKFWFQ NRRTQKKAQH ERADNCALKE ENDKIRCENI
101: AIREAIKHAI CPSCGDSPVN EDSYFDEQKL RIENAQLRDE LERVSSIAAK FLGRPISHLP PLLNPMHVSP LELFHTGPSL DFDLLPGSCS SMSVPSLPSQ
201: PNLVLSEMDK SLMTNIAVTA MEELLRLLQT NEPLWIKTDG CRDVLNLENY ENMFTRSSTS GGKKNNLGME ASRSSGVVFT NAITLVDMLM NSVKLTELFP
301: SIVASSKTLA VISSGLRGNH GDALHLMIEE LQVLSPLVTT REFCVLRYCQ QIEHGTWAIV NVSYEFPQFI SQSRSYRFPS GCLIQDMSNG YSKVTWVEHG
401: EFEEQEPIHE MFKDIVHKGL AFGAERWIAT LQRMCERFTN LLEPATSSLD LGGVIPSPEG KRSIMRLAHR MVSNFCLSVG TSNNTRSTVV SGLDEFGIRV
501: TSHKSRHEPN GMVLCAATSF WLPISPQNVF NFLKDERTRP QWDVLSNGNS VQEVAHITNG SNPGNCISVL RGFNASSSQN NMLILQESCI DSSSAALVIY
601: TPVDLPALNI AMSGQDTSYI PILPSGFAIS PDGSSKGGGS LITVGFQIMV SGLQPAKLNM ESMETVNNLI NTTVHQIKTT LNCPSTA
101: AIREAIKHAI CPSCGDSPVN EDSYFDEQKL RIENAQLRDE LERVSSIAAK FLGRPISHLP PLLNPMHVSP LELFHTGPSL DFDLLPGSCS SMSVPSLPSQ
201: PNLVLSEMDK SLMTNIAVTA MEELLRLLQT NEPLWIKTDG CRDVLNLENY ENMFTRSSTS GGKKNNLGME ASRSSGVVFT NAITLVDMLM NSVKLTELFP
301: SIVASSKTLA VISSGLRGNH GDALHLMIEE LQVLSPLVTT REFCVLRYCQ QIEHGTWAIV NVSYEFPQFI SQSRSYRFPS GCLIQDMSNG YSKVTWVEHG
401: EFEEQEPIHE MFKDIVHKGL AFGAERWIAT LQRMCERFTN LLEPATSSLD LGGVIPSPEG KRSIMRLAHR MVSNFCLSVG TSNNTRSTVV SGLDEFGIRV
501: TSHKSRHEPN GMVLCAATSF WLPISPQNVF NFLKDERTRP QWDVLSNGNS VQEVAHITNG SNPGNCISVL RGFNASSSQN NMLILQESCI DSSSAALVIY
601: TPVDLPALNI AMSGQDTSYI PILPSGFAIS PDGSSKGGGS LITVGFQIMV SGLQPAKLNM ESMETVNNLI NTTVHQIKTT LNCPSTA
Arabidopsis Description
HDG12Uncharacterized protein At1g17920 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SUW2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.