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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 5
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:mitochondrion, nucleus
BaCelLo:nucleus
MultiLoc:nucleus
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
Solyc02g063150.2.1
Solyc02g085950.2.1
Solyc03g034220.2.1
Solyc08g076370.2.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G73360.1 Solyc08g076370.2.1 AT4G17710.1 21798944
AT1G73360.1 Solyc02g063150.2.1 AT5G38420.1 21798944
AT1G73360.1 Solyc02g085950.2.1 AT5G38420.1 21798944
AT1G73360.1 Solyc03g034220.2.1 AT5G38420.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400069312 Potato nucleus 97.07 97.34
Solyc03g098200.2.1 Tomato nucleus 80.61 80.17
Os06t0208100-00 Rice nucleus 13.53 75.19
VIT_17s0053g00780.t01 Wine grape nucleus 73.64 74.37
KRH09477 Soybean nucleus 71.97 71.87
KRH38939 Soybean nucleus 72.25 71.75
KRH60596 Soybean nucleus 67.36 67.74
KRH41898 Soybean nucleus 67.78 67.41
CDX96471 Canola nucleus 62.2 62.12
Bra015996.1-P Field mustard nucleus 62.06 62.06
CDX72984 Canola nucleus 61.79 61.96
AT1G73360.1 Thale cress nucleus 62.34 61.91
AT1G17920.1 Thale cress nucleus 59.14 61.72
CDX68229 Canola nucleus 60.25 61.45
CDY26204 Canola nucleus 54.53 61.38
CDX96744 Canola nucleus 57.6 61.37
Bra003846.1-P Field mustard nucleus 59.97 60.99
CDY19185 Canola nucleus 57.6 60.56
CDY11109 Canola nucleus 59.69 60.28
CDY26205 Canola nucleus 57.74 60.0
Bra016578.1-P Field mustard nucleus 57.18 59.94
CDX83884 Canola nucleus 57.18 59.85
GSMUA_Achr10P... Banana nucleus 59.14 59.63
TraesCS6A01G324500.1 Wheat nucleus 56.9 59.56
TraesCS6D01G304300.1 Wheat nucleus 56.62 59.27
Bra025938.1-P Field mustard nucleus 57.32 59.22
Zm00001d052133_P001 Maize nucleus 57.6 59.17
EES05874 Sorghum nucleus 58.3 59.12
Zm00001d018225_P001 Maize nucleus 56.9 58.96
Os06t0207966-00 Rice plastid 21.34 58.17
TraesCS6B01G354900.3 Wheat nucleus 56.49 58.11
CDY42097 Canola nucleus 41.84 58.03
GSMUA_Achr2P15140_001 Banana nucleus 59.69 57.92
GSMUA_Achr7P11310_001 Banana nucleus 58.3 56.79
GSMUA_Achr6P05990_001 Banana nucleus 47.42 56.38
Zm00001d044973_P001 Maize nucleus 54.11 56.31
Zm00001d037140_P004 Maize nucleus 53.7 56.04
GSMUA_Achr10P... Banana nucleus 52.86 55.57
EER89393 Sorghum nucleus 54.11 55.43
TraesCS7A01G167900.1 Wheat nucleus 49.51 48.97
TraesCS7D01G168700.1 Wheat nucleus 49.79 48.77
TraesCS7B01G072700.1 Wheat nucleus 49.65 48.77
Solyc10g005330.2.1 Tomato nucleus 47.0 47.33
Solyc03g031760.2.1 Tomato cytosol 41.28 47.06
Solyc02g080260.2.1 Tomato nucleus 46.03 43.94
Solyc01g091630.2.1 Tomato nucleus 49.79 43.48
Solyc11g022410.1.1 Tomato extracellular 4.32 41.89
Solyc09g057530.1.1 Tomato cytosol 7.67 40.15
Solyc08g076370.2.1 Tomato nucleus 46.86 39.91
Solyc12g005830.1.1 Tomato nucleus 39.33 37.55
Solyc11g022430.1.1 Tomato cytosol 9.34 37.43
Solyc04g025740.1.1 Tomato nucleus 7.67 37.16
Solyc09g066070.2.1 Tomato cytosol 22.32 37.12
Solyc06g035940.2.1 Tomato nucleus 34.59 36.69
Solyc09g060140.2.1 Tomato mitochondrion 18.83 36.68
Solyc11g011940.1.1 Tomato nucleus 36.4 36.4
Solyc03g120620.2.1 Tomato nucleus 38.91 36.0
Solyc07g041850.1.1 Tomato nucleus 33.75 35.59
Solyc09g066050.2.1 Tomato cytosol 27.34 35.44
Solyc10g018030.1.1 Tomato cytosol 20.36 35.35
Solyc09g057540.2.1 Tomato cytosol 24.27 35.01
Solyc09g066030.1.1 Tomato nucleus 35.29 34.99
Solyc09g060170.1.1 Tomato cytosol 16.74 34.88
Solyc09g060130.1.1 Tomato cytosol 21.34 34.46
Solyc08g062510.2.1 Tomato nucleus 31.38 34.46
Solyc04g025490.1.1 Tomato cytosol 11.58 34.3
Solyc06g050160.2.1 Tomato nucleus 31.1 34.15
Solyc03g026070.2.1 Tomato nucleus 38.35 34.08
Solyc07g026560.1.1 Tomato cytosol 21.9 33.19
Solyc07g037910.1.1 Tomato cytosol 9.76 33.18
Solyc07g026570.1.1 Tomato nucleus 6.42 32.62
Solyc10g018000.1.1 Tomato cytosol, endoplasmic reticulum, nucleus 31.8 32.62
Solyc10g018020.1.1 Tomato extracellular 15.2 32.44
Solyc11g022420.1.1 Tomato cytosol 21.62 32.36
Solyc04g025480.1.1 Tomato cytosol 29.43 32.21
Solyc10g006420.2.1 Tomato cytosol 23.43 31.88
Solyc05g015030.1.1 Tomato cytosol 20.92 31.65
Solyc08g062520.2.1 Tomato cytosol 22.45 31.51
Bra007562.1-P Field mustard endoplasmic reticulum, mitochondrion, plasma membrane, vacuole 10.32 25.87
Protein Annotations
Gene3D:1.10.10.60MapMan:15.5.3.3GO:GO:0003674GO:GO:0003676GO:GO:0003677GO:GO:0005488
GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0006139GO:GO:0006355
GO:GO:0008150GO:GO:0008152GO:GO:0008289GO:GO:0009058GO:GO:0009987GO:GO:0043565
InterPro:Homeobox-like_sfInterPro:Homeobox_CSInterPro:Homeobox_domInterPro:IPR001356InterPro:IPR002913UniProt:K4C8V1
PFAM:PF00046PFAM:PF01852ScanProsite:PS00027PFscan:PS50071PFscan:PS50848PANTHER:PTHR24326
PANTHER:PTHR24326:SF490SMART:SM00234SMART:SM00389SUPFAM:SSF46689SUPFAM:SSF55961InterPro:START_lipid-bd_dom
EnsemblPlantsGene:Solyc06g072310.2EnsemblPlants:Solyc06g072310.2.1UniParc:UPI000276578ESEG:seg::
Description
No Description!
Coordinates
chr6:-:44588499..44591954
Molecular Weight (calculated)
78657.9 Da
IEP (calculated)
6.621
GRAVY (calculated)
-0.295
Length
717 amino acids
Sequence
(BLAST)
001: MEYGGGGGGG GGGGGASSSG GGDATDASRK KKRFHRHTAH QIQSLESVFK ECPHPDEKIR LQLSRDLGLA PRQIKFWFQN RRTQLKSQHE RADNSALRSE
101: NDRIRCENIA IREAIKNVIC PSCGGPPVTE DTYFDEQKLR MENLQLKEEL DKISSIAAKY MGRPISQLPP VQPVHLSSLN LMSMPNFGLT GPSLDLDLLP
201: GSSTSTYPNL PCPTFNISDM DKSLMADIAG NAMEELIRLL QTNEPLWTKS TTDGRDVLDI DKYGQIFPKA NSSLKNPNVR VEASRQSGVV IMNGLALVDM
301: FMDVNKWVEF FPTIVSKART LEVISCGMMG SRSSTLQLMY AEQQVLSPLV PTRQLYFLRF CQQIETGSWA IVDVSYDITQ ENMYPPSSCK VHKLPSGCLI
401: QDMPNGYSKV TWLEHVEVEE KGSIHRLYRD LIFSGMAFGA ERWLGSLQRL CERYACLMVS GNSSRELGGV IPSPEGKKSM MKVAERMVSS FCASINPSNG
501: HQWNNISTLD EFEVRATLQK CTDPGQPNGV VISAASTIWL PVPPQHVFNF LRDERTRPQW DVLSNQNPVQ EVAHIANGSH PGNSISVLRA YNTSQNNMLI
601: LQESCIDSSG SLVVYSPVDL QSINIAMSGE DTTYIPLLPS GFTISPDGRG SDEALSMNNG STMRAGGGGS LVTVVFQILV SSLSSSAKMS PESVNTVNNL
701: IGNTIHQIKA ALNCSTS
Best Arabidopsis Sequence Match ( AT1G73360.1 )
(BLAST)
001: MSFVVGVGGS GSGSGGDGGG SHHHDGSETD RKKKRYHRHT AQQIQRLESS FKECPHPDEK QRNQLSRELG LAPRQIKFWF QNRRTQLKAQ HERADNSALK
101: AENDKIRCEN IAIREALKHA ICPNCGGPPV SEDPYFDEQK LRIENAHLRE ELERMSTIAS KYMGRPISQL STLHPMHISP LDLSMTSLTG CGPFGHGPSL
201: DFDLLPGSSM AVGPNNNLQS QPNLAISDMD KPIMTGIALT AMEELLRLLQ TNEPLWTRTD GCRDILNLGS YENVFPRSSN RGKNQNFRVE ASRSSGIVFM
301: NAMALVDMFM DCVKWTELFP SIIAASKTLA VISSGMGGTH EGALHLLYEE MEVLSPLVAT REFCELRYCQ QTEQGSWIVV NVSYDLPQFV SHSQSYRFPS
401: GCLIQDMPNG YSKVTWVEHI ETEEKELVHE LYREIIHRGI AFGADRWVTT LQRMCERFAS LSVPASSSRD LGGVILSPEG KRSMMRLAQR MISNYCLSVS
501: RSNNTRSTVV SELNEVGIRV TAHKSPEPNG TVLCAATTFW LPNSPQNVFN FLKDERTRPQ WDVLSNGNAV QEVAHISNGS HPGNCISVLR GSNATHSNNM
601: LILQESSTDS SGAFVVYSPV DLAALNIAMS GEDPSYIPLL SSGFTISPDG NGSNSEQGGA STSSGRASAS GSLITVGFQI MVSNLPTAKL NMESVETVNN
701: LIGTTVHQIK TALSGPTAST TA
Arabidopsis Description
HDG11Homeobox-leucine zipper protein HDG11 [Source:UniProtKB/Swiss-Prot;Acc:Q9FX31]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.