Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr10P... | Banana | nucleus | 80.71 | 83.54 |
| Os06t0208100-00 | Rice | nucleus | 14.54 | 82.95 |
| GSMUA_Achr6P05990_001 | Banana | nucleus | 64.4 | 78.61 |
| GSMUA_Achr2P15140_001 | Banana | nucleus | 76.77 | 76.45 |
| GSMUA_Achr10P... | Banana | nucleus | 61.28 | 66.13 |
| Zm00001d018225_P001 | Maize | nucleus | 61.82 | 65.75 |
| EES05874 | Sorghum | nucleus | 62.5 | 65.06 |
| Zm00001d052133_P001 | Maize | nucleus | 61.68 | 65.04 |
| KRH38939 | Soybean | nucleus | 63.32 | 64.54 |
| TraesCS6A01G324500.1 | Wheat | nucleus | 60.05 | 64.53 |
| TraesCS6D01G304300.1 | Wheat | nucleus | 60.05 | 64.53 |
| VIT_17s0053g00780.t01 | Wine grape | nucleus | 62.23 | 64.51 |
| KRH09477 | Soybean | nucleus | 62.77 | 64.35 |
| Os06t0207966-00 | Rice | plastid | 22.96 | 64.26 |
| TraesCS6B01G354900.3 | Wheat | nucleus | 59.92 | 63.27 |
| Zm00001d044973_P001 | Maize | nucleus | 58.02 | 61.97 |
| Zm00001d037140_P004 | Maize | nucleus | 57.74 | 61.86 |
| KRH41898 | Soybean | nucleus | 60.46 | 61.72 |
| KRH60596 | Soybean | nucleus | 59.65 | 61.57 |
| EER89393 | Sorghum | nucleus | 58.02 | 61.0 |
| HORVU6Hr1G079410.6 | Barley | nucleus | 59.78 | 60.69 |
| Solyc03g098200.2.1 | Tomato | nucleus | 58.83 | 60.06 |
| PGSC0003DMT400069312 | Potato | nucleus | 57.07 | 58.74 |
| Solyc06g072310.2.1 | Tomato | nucleus | 56.79 | 58.3 |
| AT1G17920.1 | Thale cress | nucleus | 52.58 | 56.33 |
| CDX96744 | Canola | nucleus | 51.36 | 56.17 |
| AT1G73360.1 | Thale cress | nucleus | 54.21 | 55.26 |
| Bra016578.1-P | Field mustard | nucleus | 51.36 | 55.26 |
| CDX83884 | Canola | nucleus | 51.22 | 55.04 |
| CDX96471 | Canola | nucleus | 53.67 | 55.01 |
| CDX68229 | Canola | nucleus | 52.45 | 54.91 |
| CDX72984 | Canola | nucleus | 53.26 | 54.83 |
| Bra015996.1-P | Field mustard | nucleus | 53.4 | 54.81 |
| Bra003846.1-P | Field mustard | nucleus | 52.45 | 54.75 |
| CDY19185 | Canola | nucleus | 50.41 | 54.4 |
| Bra025938.1-P | Field mustard | nucleus | 50.82 | 53.89 |
| CDY26204 | Canola | nucleus | 46.6 | 53.85 |
| CDY11109 | Canola | nucleus | 51.9 | 53.8 |
| CDY26205 | Canola | nucleus | 50.41 | 53.77 |
| CDY42097 | Canola | nucleus | 37.36 | 53.19 |
| TraesCS7B01G072700.1 | Wheat | nucleus | 51.63 | 52.05 |
| TraesCS7A01G167900.1 | Wheat | nucleus | 51.09 | 51.86 |
| TraesCS7D01G168700.1 | Wheat | nucleus | 51.09 | 51.37 |
| GSMUA_Achr3P23090_001 | Banana | endoplasmic reticulum, plasma membrane | 43.48 | 48.48 |
| VIT_04s0079g00480.t01 | Wine grape | nucleus | 46.74 | 48.18 |
| GSMUA_Achr8P07310_001 | Banana | mitochondrion, nucleus | 44.29 | 44.9 |
| HORVU7Hr1G035230.2 | Barley | nucleus | 44.84 | 44.35 |
| Solyc09g057530.1.1 | Tomato | cytosol | 8.15 | 43.8 |
| GSMUA_Achr1P18760_001 | Banana | nucleus | 44.97 | 43.78 |
| GSMUA_Achr10P... | Banana | nucleus | 42.39 | 43.64 |
| GSMUA_Achr11P... | Banana | nucleus | 42.66 | 42.2 |
| GSMUA_Achr11P... | Banana | nucleus | 44.16 | 41.88 |
| KRH36827 | Soybean | nucleus | 40.22 | 41.75 |
| KRH11810 | Soybean | nucleus | 40.35 | 41.66 |
| GSMUA_Achr5P14100_001 | Banana | nucleus | 42.53 | 41.4 |
| GSMUA_Achr11P... | Banana | plastid | 44.16 | 41.19 |
| GSMUA_Achr5P10510_001 | Banana | nucleus | 44.43 | 41.13 |
| GSMUA_Achr5P20050_001 | Banana | nucleus | 44.02 | 40.75 |
| GSMUA_AchrUn_... | Banana | nucleus | 42.39 | 40.57 |
| GSMUA_Achr7P00210_001 | Banana | nucleus | 36.96 | 40.06 |
| GSMUA_Achr4P19010_001 | Banana | nucleus | 43.48 | 39.95 |
| Solyc09g060140.2.1 | Tomato | mitochondrion | 19.84 | 39.67 |
| AT3G03260.1 | Thale cress | nucleus | 37.5 | 39.48 |
| PGSC0003DMT400051268 | Potato | cytosol | 26.77 | 39.48 |
| AT5G17320.1 | Thale cress | nucleus | 38.32 | 39.28 |
| Solyc09g066070.2.1 | Tomato | cytosol | 22.83 | 38.98 |
| GSMUA_Achr3P12410_001 | Banana | nucleus | 38.86 | 38.54 |
| CDX85461 | Canola | cytosol | 36.82 | 38.44 |
| Bra023611.1-P | Field mustard | nucleus | 36.68 | 38.3 |
| KRH36826 | Soybean | nucleus | 37.09 | 38.29 |
| PGSC0003DMT400085057 | Potato | cytosol | 24.73 | 38.08 |
| Solyc09g057540.2.1 | Tomato | cytosol | 25.68 | 38.03 |
| CDY62389 | Canola | cytosol | 25.14 | 37.83 |
| PGSC0003DMT400034503 | Potato | cytosol, nucleus | 34.92 | 37.74 |
| Solyc09g060170.1.1 | Tomato | cytosol | 17.53 | 37.5 |
| Solyc09g066050.2.1 | Tomato | cytosol | 28.12 | 37.43 |
| AT1G34650.1 | Thale cress | nucleus | 36.01 | 37.43 |
| CDY53691 | Canola | nucleus | 35.87 | 37.18 |
| GSMUA_Achr3P15400_001 | Banana | nucleus | 37.77 | 37.12 |
| Bra003213.1-P | Field mustard | nucleus | 35.73 | 37.04 |
| PGSC0003DMT400051266 | Potato | cytosol | 19.57 | 37.02 |
| Bra032003.1-P | Field mustard | nucleus | 34.65 | 37.01 |
| Bra020066.1-P | Field mustard | nucleus | 34.24 | 36.95 |
| CDY43137 | Canola | nucleus | 34.51 | 36.87 |
| CDY42301 | Canola | nucleus | 34.51 | 36.81 |
| Solyc10g018030.1.1 | Tomato | cytosol | 20.65 | 36.8 |
| CDY67945 | Canola | nucleus | 34.38 | 36.72 |
| Solyc09g060130.1.1 | Tomato | cytosol | 22.15 | 36.71 |
| CDY49937 | Canola | nucleus | 34.51 | 36.6 |
| PGSC0003DMT400038820 | Potato | extracellular | 18.07 | 36.54 |
| Bra008562.1-P | Field mustard | cytosol, nucleus, plastid | 35.87 | 36.51 |
| Solyc11g011940.1.1 | Tomato | nucleus | 35.46 | 36.4 |
| Solyc08g062510.2.1 | Tomato | nucleus | 32.2 | 36.29 |
| CDY02713 | Canola | nucleus | 36.41 | 36.27 |
| CDY69499 | Canola | cytosol | 14.95 | 36.18 |
| CDY44946 | Canola | nucleus | 31.79 | 36.11 |
| CDY21211 | Canola | nucleus | 33.83 | 35.88 |
| Solyc09g066030.1.1 | Tomato | nucleus | 35.05 | 35.68 |
| Bra021363.1-P | Field mustard | nucleus | 35.19 | 35.63 |
| Solyc07g026570.1.1 | Tomato | nucleus | 6.79 | 35.46 |
| CDY16938 | Canola | nucleus | 31.52 | 35.15 |
| Solyc10g018020.1.1 | Tomato | extracellular | 16.03 | 35.12 |
| Solyc05g015030.1.1 | Tomato | cytosol | 22.42 | 34.81 |
| Solyc07g026560.1.1 | Tomato | cytosol | 22.28 | 34.67 |
| Solyc04g025490.1.1 | Tomato | cytosol | 11.28 | 34.3 |
| GSMUA_Achr8P27340_001 | Banana | nucleus | 34.78 | 34.18 |
| Solyc11g022420.1.1 | Tomato | cytosol | 22.15 | 34.03 |
| KRH42428 | Soybean | nucleus | 34.51 | 33.55 |
| Solyc08g062520.2.1 | Tomato | cytosol | 22.96 | 33.07 |
| Solyc10g018000.1.1 | Tomato | cytosol, endoplasmic reticulum, nucleus | 30.84 | 32.48 |
| Solyc07g037910.1.1 | Tomato | cytosol | 9.1 | 31.75 |
| Solyc04g025480.1.1 | Tomato | cytosol | 28.12 | 31.6 |
| PGSC0003DMT400036411 | Potato | nucleus | 22.42 | 31.43 |
| KRH42429 | Soybean | cytosol | 29.76 | 30.0 |
| TraesCSU01G150000.1 | Wheat | nucleus | 8.29 | 27.98 |
| TraesCSU01G244000.1 | Wheat | nucleus | 6.93 | 24.76 |
| Bra007562.1-P | Field mustard | endoplasmic reticulum, mitochondrion, plasma membrane, vacuole | 9.1 | 23.43 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.3 | Gene3D:3.30.530.20 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008289 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0043565 | EnsemblPlantsGene:GSMUA_Achr7G11310_001 | EnsemblPlants:GSMUA_Achr7P11310_001 | EnsemblPlants:GSMUA_Achr7T11310_001 | InterPro:Homeobox-like_sf | InterPro:Homeobox_CS |
| InterPro:Homeobox_dom | InterPro:IPR001356 | InterPro:IPR002913 | InterPro:IPR023393 | UniProt:M0TGL9 | PFAM:PF00046 |
| PFAM:PF01852 | ScanProsite:PS00027 | PFscan:PS50071 | PFscan:PS50848 | PANTHER:PTHR24326 | PANTHER:PTHR24326:SF490 |
| SMART:SM00234 | SMART:SM00389 | SUPFAM:SSF46689 | SUPFAM:SSF55961 | InterPro:START-like_dom_sf | InterPro:START_lipid-bd_dom |
| UniParc:UPI000296A0DE | SEG:seg | : | : | : | : |
Description
Homeobox-leucine zipper protein ROC8 [Source:GMGC_GENE;Acc:GSMUA_Achr7G11310_001]
Coordinates
chr7:-:9019120..9023562
Molecular Weight (calculated)
81184.2 Da
IEP (calculated)
6.084
GRAVY (calculated)
-0.199
Length
736 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSGDEQDVP DSQGRKKRYH RHTPRQIQEL ESMFKVCPHP DEKQRAQLSR DLGLEPRQIK FWFQNRRTQM KATARRSLLA DNCLLRAEND KIRCENIAMR
101: EAMKNVICPS CGAPPASDDS YFDEQKLRME NARLKEEVTS TSLSSNLFVG GDPSRVDDYI RCHQSTLVVL DRVSSLASKY LGRPITQLPP VQPLSVSSLD
201: LSVGGYISEL EKPLMMEMAT GAMEEVIRLV QADAPLWVKS GSDGRDILQL ETYDRIFQRS NRQLRFPDTQ TEASRDSALV FMNATTLIDM FMDASKWAEL
301: FPTIVSKART FEVLAAGMAG SRSGSLILMY EELQVLSPVV PTREFCFLRY CQQIEPHVWA VADVSVDYPR DNQLAPSRSR KLPSGCLIEE MSNGYSKITW
401: VEHMEIEEKN PIHILFRDLI NSGMAFGAQR WLTTLQRMCE RFACLTITGL PARDLGVTPT PDGKKSMMKL AQRMVNNFCA NVGAANGHKW TTLSGLNDVG
501: VRVTLHKSTD AGQPNGVVLS AATSIWLPIS TERVFSFFKD EQTRTQWDVL ANGNTVQEVA HITNGSHPGN CISLLLCLPA PIIFSFHIFH EFVCFGLNSG
601: QNTMLILQEC CTDASGSVVV YSPIDLPAIN IVMSGEDPSY VPILPSGFTI LPDGRSAGGQ GASSSSNPLG GSSGSLVTVA FQILMSSLPS AKLNLESVTT
701: VNNLIGTTVQ QIKAALNSSG NGSVMQSNEL DDAAQS
101: EAMKNVICPS CGAPPASDDS YFDEQKLRME NARLKEEVTS TSLSSNLFVG GDPSRVDDYI RCHQSTLVVL DRVSSLASKY LGRPITQLPP VQPLSVSSLD
201: LSVGGYISEL EKPLMMEMAT GAMEEVIRLV QADAPLWVKS GSDGRDILQL ETYDRIFQRS NRQLRFPDTQ TEASRDSALV FMNATTLIDM FMDASKWAEL
301: FPTIVSKART FEVLAAGMAG SRSGSLILMY EELQVLSPVV PTREFCFLRY CQQIEPHVWA VADVSVDYPR DNQLAPSRSR KLPSGCLIEE MSNGYSKITW
401: VEHMEIEEKN PIHILFRDLI NSGMAFGAQR WLTTLQRMCE RFACLTITGL PARDLGVTPT PDGKKSMMKL AQRMVNNFCA NVGAANGHKW TTLSGLNDVG
501: VRVTLHKSTD AGQPNGVVLS AATSIWLPIS TERVFSFFKD EQTRTQWDVL ANGNTVQEVA HITNGSHPGN CISLLLCLPA PIIFSFHIFH EFVCFGLNSG
601: QNTMLILQEC CTDASGSVVV YSPIDLPAIN IVMSGEDPSY VPILPSGFTI LPDGRSAGGQ GASSSSNPLG GSSGSLVTVA FQILMSSLPS AKLNLESVTT
701: VNNLIGTTVQ QIKAALNSSG NGSVMQSNEL DDAAQS
001: MSFVVGVGGS GSGSGGDGGG SHHHDGSETD RKKKRYHRHT AQQIQRLESS FKECPHPDEK QRNQLSRELG LAPRQIKFWF QNRRTQLKAQ HERADNSALK
101: AENDKIRCEN IAIREALKHA ICPNCGGPPV SEDPYFDEQK LRIENAHLRE ELERMSTIAS KYMGRPISQL STLHPMHISP LDLSMTSLTG CGPFGHGPSL
201: DFDLLPGSSM AVGPNNNLQS QPNLAISDMD KPIMTGIALT AMEELLRLLQ TNEPLWTRTD GCRDILNLGS YENVFPRSSN RGKNQNFRVE ASRSSGIVFM
301: NAMALVDMFM DCVKWTELFP SIIAASKTLA VISSGMGGTH EGALHLLYEE MEVLSPLVAT REFCELRYCQ QTEQGSWIVV NVSYDLPQFV SHSQSYRFPS
401: GCLIQDMPNG YSKVTWVEHI ETEEKELVHE LYREIIHRGI AFGADRWVTT LQRMCERFAS LSVPASSSRD LGGVILSPEG KRSMMRLAQR MISNYCLSVS
501: RSNNTRSTVV SELNEVGIRV TAHKSPEPNG TVLCAATTFW LPNSPQNVFN FLKDERTRPQ WDVLSNGNAV QEVAHISNGS HPGNCISVLR GSNATHSNNM
601: LILQESSTDS SGAFVVYSPV DLAALNIAMS GEDPSYIPLL SSGFTISPDG NGSNSEQGGA STSSGRASAS GSLITVGFQI MVSNLPTAKL NMESVETVNN
701: LIGTTVHQIK TALSGPTAST TA
101: AENDKIRCEN IAIREALKHA ICPNCGGPPV SEDPYFDEQK LRIENAHLRE ELERMSTIAS KYMGRPISQL STLHPMHISP LDLSMTSLTG CGPFGHGPSL
201: DFDLLPGSSM AVGPNNNLQS QPNLAISDMD KPIMTGIALT AMEELLRLLQ TNEPLWTRTD GCRDILNLGS YENVFPRSSN RGKNQNFRVE ASRSSGIVFM
301: NAMALVDMFM DCVKWTELFP SIIAASKTLA VISSGMGGTH EGALHLLYEE MEVLSPLVAT REFCELRYCQ QTEQGSWIVV NVSYDLPQFV SHSQSYRFPS
401: GCLIQDMPNG YSKVTWVEHI ETEEKELVHE LYREIIHRGI AFGADRWVTT LQRMCERFAS LSVPASSSRD LGGVILSPEG KRSMMRLAQR MISNYCLSVS
501: RSNNTRSTVV SELNEVGIRV TAHKSPEPNG TVLCAATTFW LPNSPQNVFN FLKDERTRPQ WDVLSNGNAV QEVAHISNGS HPGNCISVLR GSNATHSNNM
601: LILQESSTDS SGAFVVYSPV DLAALNIAMS GEDPSYIPLL SSGFTISPDG NGSNSEQGGA STSSGRASAS GSLITVGFQI MVSNLPTAKL NMESVETVNN
701: LIGTTVHQIK TALSGPTAST TA
Arabidopsis Description
HDG11Homeobox-leucine zipper protein HDG11 [Source:UniProtKB/Swiss-Prot;Acc:Q9FX31]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.