Factsheet for VIT_04s0079g00480.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os06t0208100-00	Rice	nucleus	13.17	72.87
VIT_17s0053g00780.t01	Wine grape	nucleus	55.74	56.06
KRH36827	Soybean	nucleus	52.52	52.89
Zm00001d018225_P001	Maize	nucleus	51.26	52.89
TraesCS6D01G304300.1	Wheat	nucleus	50.28	52.41
TraesCS6A01G324500.1	Wheat	nucleus	50.14	52.26
Zm00001d052133_P001	Maize	nucleus	50.56	51.72
KRH11810	Soybean	nucleus	51.54	51.61
TraesCS6B01G354900.3	Wheat	nucleus	50.28	51.51
EES05874	Sorghum	nucleus	50.98	51.49
Zm00001d044973_P001	Maize	nucleus	48.74	50.51
Solyc09g057530.1.1	Tomato	cytosol	9.66	50.37
Zm00001d037140_P004	Maize	nucleus	48.46	50.36
EER89393	Sorghum	nucleus	48.74	49.71
GSMUA_Achr6P05990_001	Banana	nucleus	41.74	49.42
GSMUA_Achr10P...	Banana	nucleus	49.02	49.23
Os06t0207966-00	Rice	plastid	17.93	48.67
GSMUA_Achr2P15140_001	Banana	nucleus	49.44	47.77
GSMUA_Achr7P11310_001	Banana	nucleus	48.18	46.74
AT3G03260.1	Thale cress	nucleus	44.96	45.92
GSMUA_Achr10P...	Banana	nucleus	43.84	45.89
CDY62389	Canola	cytosol	31.37	45.81
KRH36826	Soybean	nucleus	45.38	45.44
CDX85461	Canola	cytosol	44.68	45.25
Bra023611.1-P	Field mustard	nucleus	44.54	45.11
PGSC0003DMT400038820	Potato	extracellular	22.97	45.05
TraesCS7B01G072700.1	Wheat	nucleus	44.96	43.97
TraesCS7D01G168700.1	Wheat	nucleus	44.96	43.85
TraesCS7A01G167900.1	Wheat	nucleus	44.4	43.72
Solyc09g066070.2.1	Tomato	cytosol	26.33	43.62
PGSC0003DMT400034503	Potato	cytosol, nucleus	41.46	43.47
CDY02713	Canola	nucleus	44.82	43.3
PGSC0003DMT400051268	Potato	cytosol	30.25	43.29
PGSC0003DMT400085057	Potato	cytosol	28.85	43.1
VIT_10s0116g00680.t01	Wine grape	nucleus	43.42	42.7
CDY42301	Canola	nucleus	41.18	42.61
Bra032003.1-P	Field mustard	nucleus	41.04	42.53
Solyc11g011940.1.1	Tomato	nucleus	42.58	42.4
CDY53691	Canola	nucleus	42.16	42.39
CDY43137	Canola	nucleus	40.9	42.38
Bra003213.1-P	Field mustard	nucleus	42.02	42.25
Solyc10g018030.1.1	Tomato	cytosol	24.37	42.13
CDY69499	Canola	cytosol	17.93	42.11
AT1G34650.1	Thale cress	nucleus	41.74	42.09
Bra008562.1-P	Field mustard	cytosol, nucleus, plastid	42.58	42.05
Bra020066.1-P	Field mustard	nucleus	40.06	41.94
Solyc09g057540.2.1	Tomato	cytosol	29.13	41.85
CDY67945	Canola	nucleus	40.34	41.8
AT5G17320.1	Thale cress	nucleus	41.88	41.64
VIT_12s0059g02310.t01	Wine grape	nucleus	44.12	41.61
CDY16938	Canola	nucleus	38.38	41.52
Solyc09g066030.1.1	Tomato	nucleus	41.88	41.36
Solyc07g026560.1.1	Tomato	cytosol	27.31	41.23
CDY44946	Canola	nucleus	37.25	41.05
Solyc09g060130.1.1	Tomato	cytosol	25.35	40.77
Solyc04g025490.1.1	Tomato	cytosol	13.73	40.5
Solyc07g026570.1.1	Tomato	nucleus	7.98	40.43
Solyc09g060170.1.1	Tomato	cytosol	19.47	40.41
Bra021363.1-P	Field mustard	nucleus	41.04	40.3
Solyc09g060140.2.1	Tomato	mitochondrion	20.73	40.22
CDY49937	Canola	nucleus	39.08	40.2
Solyc09g066050.2.1	Tomato	cytosol	31.09	40.14
Solyc11g022420.1.1	Tomato	cytosol	26.89	40.08
CDY21211	Canola	nucleus	38.94	40.06
Solyc05g015030.1.1	Tomato	cytosol	26.47	39.87
Solyc08g062510.2.1	Tomato	nucleus	36.27	39.66
Solyc10g018020.1.1	Tomato	extracellular	18.63	39.58
KRH42428	Soybean	nucleus	41.6	39.23
PGSC0003DMT400051266	Potato	cytosol	21.15	38.82
Solyc10g018000.1.1	Tomato	cytosol, endoplasmic reticulum, nucleus	37.82	38.63
VIT_15s0048g02000.t01	Wine grape	nucleus	43.7	38.47
Solyc08g062520.2.1	Tomato	cytosol	27.03	37.77
VIT_02s0012g02030.t01	Wine grape	nucleus	42.16	37.72
VIT_09s0018g02100.t01	Wine grape	nucleus	4.06	37.66
Solyc07g037910.1.1	Tomato	cytosol	11.06	37.44
PGSC0003DMT400036411	Potato	nucleus	27.17	36.95
VIT_16s0100g00670.t01	Wine grape	nucleus	39.36	35.89
VIT_09s0002g04340.t01	Wine grape	nucleus	37.53	35.73
Solyc04g025480.1.1	Tomato	cytosol	32.77	35.73
KRH42429	Soybean	cytosol	35.57	34.79
VIT_19s0177g00240.t01	Wine grape	cytosol, mitochondrion	11.2	33.76
TraesCSU01G150000.1	Wheat	nucleus	7.7	25.23
VIT_13s0067g01580.t01	Wine grape	nucleus	3.92	25.0
TraesCSU01G244000.1	Wheat	nucleus	6.58	22.82
HORVU3Hr1G022170.1	Barley	cytosol	2.94	17.65

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100254711	wikigene:100254711	MapMan:15.5.3.3	Gene3D:3.30.530.20	EMBL:AM439671
ProteinID:CAN76162	ProteinID:CAN76162.1	ProteinID:CBI27350	ProteinID:CBI27350.3	ncoils:Coil	UniProt:D7TA28
EMBL:FN595753	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0008289	InterPro:Homeobox-like_sf	InterPro:Homeobox_dom
InterPro:IPR001356	InterPro:IPR002913	InterPro:IPR023393	EntrezGene:LOC100254711	wikigene:LOC100254711	PFAM:PF00046
PFAM:PF01852	PFscan:PS50071	PFscan:PS50848	PANTHER:PTHR24326	PANTHER:PTHR24326:SF504	SMART:SM00234
SMART:SM00389	SUPFAM:SSF46689	SUPFAM:SSF55961	InterPro:START-like_dom_sf	InterPro:START_lipid-bd_dom	UniParc:UPI00015CA88D
ArrayExpress:VIT_04s0079g00480	EnsemblPlantsGene:VIT_04s0079g00480	EnsemblPlants:VIT_04s0079g00480.t01	RefSeq:XP_002268272	RefSeq:XP_002268272.1	SEG:seg

Description

No Description!

Coordinates

chr4:+:10997910..11025564

Molecular Weight (calculated)

78790.7 Da

IEP (calculated)

6.290

GRAVY (calculated)

-0.258

Length

714 amino acids

Sequence
(BLAST)

001: MEFRTGGNGS GGDQDGPNPR RGRKVYNRHT PQQIQRLEAF FKDCPHPDEA QRRQLGRELG LESRQIKFWF QNKRTQTKTQ HERADNTALR AENERIQCEN
101: LAIREALKNV ICPSCGGPPF GEEERQRNIE KLQLENAQLK EEHEKVSNLL AKYIGKPITQ MHLLPPALGS SLDFSPGSFP SQETGGLSIP TVGPALGLEL
201: APVDVCNASV MYQFKGFPDM EKTLMTETAA GAMDELIRLV RINEPLWVKS ATNEKYVLHH DSYERIFPKA THFKSSNARI ESSKESVVVA MNGMQLVNMF
301: LDPNKYVDLF PTIVTKASTI QVLEAGIIGS RSGSLQLMYE QMHILSPLVA PREFYFLRYC QQIELGVWVM VDVSYDYSKD GQPNSLRFWK LPSGCMIQDL
401: PDGCSKVTWV EHVEVDDKSL THRLYRDLVS GSLAFGAERM VGTLQRMCER LAYLADENTP TRDLAGVISL PEGRRSIMKL GHRMVKDFCG VLSMSGKLDF
501: PQLSEVDTSG VRVSVRKSTE PGQPGGLIVS AATSLWLPMQ CQTIFDFIRD EKMRPQWDVL SSGNPVHEIA HIANGVNPGN CTSIIRPFVP TENNMLMLQE
601: SCVEPLGGLV VYAPIDIPAI NVAIRGEESG NIPILPSGFI VSGDGRSDSG AGCTSDGNIM GSGGSLLTVA FQVLVCGPAA PQQQLNMESV ATVNTLISST
701: VQKIKIALNC SGLD

Best Arabidopsis Sequence Match ( AT1G73360.1 )
(BLAST)

001: MSFVVGVGGS GSGSGGDGGG SHHHDGSETD RKKKRYHRHT AQQIQRLESS FKECPHPDEK QRNQLSRELG LAPRQIKFWF QNRRTQLKAQ HERADNSALK
101: AENDKIRCEN IAIREALKHA ICPNCGGPPV SEDPYFDEQK LRIENAHLRE ELERMSTIAS KYMGRPISQL STLHPMHISP LDLSMTSLTG CGPFGHGPSL
201: DFDLLPGSSM AVGPNNNLQS QPNLAISDMD KPIMTGIALT AMEELLRLLQ TNEPLWTRTD GCRDILNLGS YENVFPRSSN RGKNQNFRVE ASRSSGIVFM
301: NAMALVDMFM DCVKWTELFP SIIAASKTLA VISSGMGGTH EGALHLLYEE MEVLSPLVAT REFCELRYCQ QTEQGSWIVV NVSYDLPQFV SHSQSYRFPS
401: GCLIQDMPNG YSKVTWVEHI ETEEKELVHE LYREIIHRGI AFGADRWVTT LQRMCERFAS LSVPASSSRD LGGVILSPEG KRSMMRLAQR MISNYCLSVS
501: RSNNTRSTVV SELNEVGIRV TAHKSPEPNG TVLCAATTFW LPNSPQNVFN FLKDERTRPQ WDVLSNGNAV QEVAHISNGS HPGNCISVLR GSNATHSNNM
601: LILQESSTDS SGAFVVYSPV DLAALNIAMS GEDPSYIPLL SSGFTISPDG NGSNSEQGGA STSSGRASAS GSLITVGFQI MVSNLPTAKL NMESVETVNN
701: LIGTTVHQIK TALSGPTAST TA

Arabidopsis Description

HDG11Homeobox-leucine zipper protein HDG11 [Source:UniProtKB/Swiss-Prot;Acc:Q9FX31]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.