Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1B01G045500.1 | Wheat | nucleus | 92.66 | 92.66 |
| TraesCSU01G244000.1 | Wheat | nucleus | 82.11 | 86.89 |
| HORVU1Hr1G005430.1 | Barley | nucleus | 73.39 | 73.39 |
| Os06t0208100-00 | Rice | nucleus | 23.85 | 40.31 |
| Bra007562.1-P | Field mustard | endoplasmic reticulum, mitochondrion, plasma membrane, vacuole | 24.77 | 18.88 |
| CDY42097 | Canola | nucleus | 22.48 | 9.48 |
| GSMUA_Achr6P05990_001 | Banana | nucleus | 25.23 | 9.12 |
| Zm00001d018225_P001 | Maize | nucleus | 28.9 | 9.1 |
| VIT_17s0053g00780.t01 | Wine grape | nucleus | 29.36 | 9.01 |
| CDY26204 | Canola | nucleus | 26.15 | 8.95 |
| PGSC0003DMT400069312 | Potato | nucleus | 28.9 | 8.81 |
| Zm00001d052133_P001 | Maize | nucleus | 27.98 | 8.74 |
| KRH41898 | Soybean | nucleus | 28.9 | 8.74 |
| GSMUA_Achr10P... | Banana | nucleus | 28.44 | 8.72 |
| KRH09477 | Soybean | nucleus | 28.44 | 8.64 |
| EES05874 | Sorghum | nucleus | 27.98 | 8.63 |
| KRH38939 | Soybean | nucleus | 28.44 | 8.59 |
| KRH60596 | Soybean | nucleus | 27.98 | 8.56 |
| CDY19185 | Canola | nucleus | 26.61 | 8.5 |
| Zm00001d037140_P004 | Maize | nucleus | 26.61 | 8.44 |
| Zm00001d044973_P001 | Maize | nucleus | 26.61 | 8.42 |
| CDX96744 | Canola | nucleus | 25.69 | 8.32 |
| AT1G17920.1 | Thale cress | nucleus | 26.15 | 8.3 |
| GSMUA_Achr7P11310_001 | Banana | nucleus | 27.98 | 8.29 |
| EER89393 | Sorghum | nucleus | 26.61 | 8.29 |
| CDY26205 | Canola | nucleus | 26.15 | 8.26 |
| CDX68229 | Canola | nucleus | 26.61 | 8.25 |
| Bra025938.1-P | Field mustard | nucleus | 26.15 | 8.21 |
| Bra016578.1-P | Field mustard | nucleus | 25.69 | 8.19 |
| CDX83884 | Canola | nucleus | 25.69 | 8.18 |
| CDY11109 | Canola | nucleus | 26.61 | 8.17 |
| GSMUA_Achr2P15140_001 | Banana | nucleus | 27.52 | 8.12 |
| GSMUA_Achr10P... | Banana | nucleus | 25.23 | 8.06 |
| AT1G73360.1 | Thale cress | nucleus | 26.61 | 8.03 |
| AT3G03260.1 | Thale cress | nucleus | 25.69 | 8.01 |
| Bra015996.1-P | Field mustard | nucleus | 26.15 | 7.95 |
| Bra003846.1-P | Field mustard | nucleus | 25.69 | 7.94 |
| CDX96471 | Canola | nucleus | 25.69 | 7.8 |
| VIT_04s0079g00480.t01 | Wine grape | nucleus | 25.23 | 7.7 |
| CDX72984 | Canola | nucleus | 25.23 | 7.69 |
| CDY44946 | Canola | nucleus | 22.48 | 7.56 |
| CDY67945 | Canola | nucleus | 23.85 | 7.55 |
| CDY42301 | Canola | nucleus | 23.85 | 7.54 |
| Bra032003.1-P | Field mustard | nucleus | 23.39 | 7.4 |
| CDY43137 | Canola | nucleus | 23.39 | 7.4 |
| KRH42428 | Soybean | nucleus | 25.69 | 7.4 |
| CDY49937 | Canola | nucleus | 23.39 | 7.35 |
| CDY21211 | Canola | nucleus | 23.39 | 7.35 |
| CDY16938 | Canola | nucleus | 22.02 | 7.27 |
| Bra020066.1-P | Field mustard | nucleus | 22.48 | 7.18 |
| KRH36826 | Soybean | nucleus | 23.39 | 7.15 |
| CDX85461 | Canola | cytosol | 22.94 | 7.09 |
| Bra023611.1-P | Field mustard | nucleus | 22.94 | 7.09 |
| Bra003213.1-P | Field mustard | nucleus | 22.94 | 7.04 |
| CDY53691 | Canola | nucleus | 22.94 | 7.04 |
| Bra021363.1-P | Field mustard | nucleus | 23.39 | 7.02 |
| KRH11810 | Soybean | nucleus | 22.48 | 6.87 |
| AT5G17320.1 | Thale cress | nucleus | 22.48 | 6.82 |
| Bra008562.1-P | Field mustard | cytosol, nucleus, plastid | 22.48 | 6.78 |
| AT1G34650.1 | Thale cress | nucleus | 21.56 | 6.64 |
| CDY02713 | Canola | nucleus | 22.48 | 6.63 |
| KRH36827 | Soybean | nucleus | 21.56 | 6.63 |
| PGSC0003DMT400034503 | Potato | cytosol, nucleus | 17.43 | 5.58 |
| PGSC0003DMT400051266 | Potato | cytosol | 4.13 | 2.31 |
| KRH42429 | Soybean | cytosol | 7.34 | 2.19 |
| Os06t0207966-00 | Rice | plastid | 2.29 | 1.9 |
| PGSC0003DMT400085057 | Potato | cytosol | 3.21 | 1.46 |
| CDY62389 | Canola | cytosol | 3.21 | 1.43 |
| PGSC0003DMT400051268 | Potato | cytosol | 3.21 | 1.4 |
| Solyc11g022410.1.1 | Tomato | extracellular | 0.46 | 1.35 |
| CDY69499 | Canola | cytosol | 1.83 | 1.32 |
| PGSC0003DMT400038820 | Potato | extracellular | 1.38 | 0.82 |
| PGSC0003DMT400036411 | Potato | nucleus | 1.38 | 0.57 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.3 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0043565 | InterPro:Homeobox-like_sf | InterPro:Homeobox_CS | InterPro:Homeobox_dom | InterPro:IPR001356 | PFAM:PF00046 |
| ScanProsite:PS00027 | PFscan:PS50071 | PANTHER:PTHR24326 | PANTHER:PTHR24326:SF320 | SMART:SM00389 | SUPFAM:SSF46689 |
| EnsemblPlantsGene:TraesCSU01G150000 | EnsemblPlants:TraesCSU01G150000.1 | TIGR:cd00086 | SEG:seg | : | : |
Description
No Description!
Coordinates
chrUn:-:181248741..181250428
Molecular Weight (calculated)
25472.2 Da
IEP (calculated)
9.155
GRAVY (calculated)
-1.055
Length
218 amino acids
Sequence
(BLAST)
(BLAST)
001: MDGGWPQYNC VVHNDLDPFM TSEHNHLLQH DHGDETYGLL GATANVGMID NTNVVAGNQG NNNGETYSEQ RMQPRHTNYH RLRREQIQQL EAVFREIPYP
101: DEKLRKTLSE RLGMSAQQVK FWFQNHRRNS KGKTQRRETN TLQLENQMLK SDRQAIMLAM ENKTCLKCRG AVVQTQDSSE RQRLFKENMK LKEELRLAAT
201: HLKEGLQQNG MWPRLTHN
101: DEKLRKTLSE RLGMSAQQVK FWFQNHRRNS KGKTQRRETN TLQLENQMLK SDRQAIMLAM ENKTCLKCRG AVVQTQDSSE RQRLFKENMK LKEELRLAAT
201: HLKEGLQQNG MWPRLTHN
001: MYHPNMFESH HMFDMTPKST SDNDLGITGS REDDFETKSG TEVTTENPSG EELQDPSQRP NKKKRYHRHT QRQIQELESF FKECPHPDDK QRKELSRDLN
101: LEPLQVKFWF QNKRTQMKAQ SERHENQILK SDNDKLRAEN NRYKEALSNA TCPNCGGPAA IGEMSFDEQH LRIENARLRE EIDRISAIAA KYVGKPLGSS
201: FAPLAIHAPS RSLDLEVGNF GNQTGFVGEM YGTGDILRSV SIPSETDKPI IVELAVAAME ELVRMAQTGD PLWLSTDNSV EILNEEEYFR TFPRGIGPKP
301: LGLRSEASRQ SAVVIMNHIN LVEILMDVNQ WSCVFSGIVS RALTLEVLST GVAGNYNGAL QVMTAEFQVP SPLVPTRENY FVRYCKQHSD GSWAVVDVSL
401: DSLRPSTPIL RTRRRPSGCL IQELPNGYSK VTWIEHMEVD DRSVHNMYKP LVQSGLAFGA KRWVATLERQ CERLASSMAS NIPGDLSVIT SPEGRKSMLK
501: LAERMVMSFC SGVGASTAHA WTTMSTTGSD DVRVMTRKSM DDPGRPPGIV LSAATSFWIP VAPKRVFDFL RDENSRKEWD ILSNGGMVQE MAHIANGHEP
601: GNCVSLLRVN SGNSSQSNML ILQESCTDAS GSYVIYAPVD IVAMNVVLSG GDPDYVALLP SGFAILPDGS VGGGDGNQHQ EMVSTTSSGS CGGSLLTVAF
701: QILVDSVPTA KLSLGSVATV NSLIKCTVER IKAAVSCDVG GGA
101: LEPLQVKFWF QNKRTQMKAQ SERHENQILK SDNDKLRAEN NRYKEALSNA TCPNCGGPAA IGEMSFDEQH LRIENARLRE EIDRISAIAA KYVGKPLGSS
201: FAPLAIHAPS RSLDLEVGNF GNQTGFVGEM YGTGDILRSV SIPSETDKPI IVELAVAAME ELVRMAQTGD PLWLSTDNSV EILNEEEYFR TFPRGIGPKP
301: LGLRSEASRQ SAVVIMNHIN LVEILMDVNQ WSCVFSGIVS RALTLEVLST GVAGNYNGAL QVMTAEFQVP SPLVPTRENY FVRYCKQHSD GSWAVVDVSL
401: DSLRPSTPIL RTRRRPSGCL IQELPNGYSK VTWIEHMEVD DRSVHNMYKP LVQSGLAFGA KRWVATLERQ CERLASSMAS NIPGDLSVIT SPEGRKSMLK
501: LAERMVMSFC SGVGASTAHA WTTMSTTGSD DVRVMTRKSM DDPGRPPGIV LSAATSFWIP VAPKRVFDFL RDENSRKEWD ILSNGGMVQE MAHIANGHEP
601: GNCVSLLRVN SGNSSQSNML ILQESCTDAS GSYVIYAPVD IVAMNVVLSG GDPDYVALLP SGFAILPDGS VGGGDGNQHQ EMVSTTSSGS CGGSLLTVAF
701: QILVDSVPTA KLSLGSVATV NSLIKCTVER IKAAVSCDVG GGA
Arabidopsis Description
PDF2Homeobox-leucine zipper protein PROTODERMAL FACTOR 2 [Source:UniProtKB/Swiss-Prot;Acc:Q93V99]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.