Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY26204 | Canola | nucleus | 90.18 | 96.55 |
| CDY26205 | Canola | nucleus | 93.99 | 92.9 |
| CDX96744 | Canola | nucleus | 85.78 | 86.92 |
| CDX83884 | Canola | nucleus | 85.92 | 85.55 |
| AT1G17920.1 | Thale cress | nucleus | 85.04 | 84.42 |
| CDY42097 | Canola | nucleus | 63.05 | 83.17 |
| Os06t0208100-00 | Rice | nucleus | 13.05 | 68.99 |
| CDX68229 | Canola | nucleus | 70.53 | 68.42 |
| CDY11109 | Canola | nucleus | 70.23 | 67.46 |
| CDX72984 | Canola | nucleus | 70.53 | 67.27 |
| CDX96471 | Canola | nucleus | 70.67 | 67.13 |
| KRH09477 | Soybean | nucleus | 64.96 | 61.7 |
| VIT_17s0053g00780.t01 | Wine grape | nucleus | 63.93 | 61.41 |
| KRH38939 | Soybean | nucleus | 64.52 | 60.94 |
| PGSC0003DMT400069312 | Potato | nucleus | 61.14 | 58.32 |
| Solyc06g072310.2.1 | Tomato | nucleus | 60.56 | 57.6 |
| KRH60596 | Soybean | nucleus | 60.12 | 57.5 |
| Solyc03g098200.2.1 | Tomato | nucleus | 60.56 | 57.28 |
| KRH41898 | Soybean | nucleus | 59.53 | 56.31 |
| GSMUA_Achr6P05990_001 | Banana | nucleus | 47.36 | 53.57 |
| TraesCS6D01G304300.1 | Wheat | nucleus | 53.67 | 53.43 |
| TraesCS6A01G324500.1 | Wheat | nucleus | 53.37 | 53.14 |
| GSMUA_Achr10P... | Banana | nucleus | 55.13 | 52.88 |
| Os06t0207966-00 | Rice | plastid | 20.23 | 52.47 |
| TraesCS6B01G354900.3 | Wheat | nucleus | 53.37 | 52.22 |
| Zm00001d018225_P001 | Maize | nucleus | 52.64 | 51.88 |
| Zm00001d052133_P001 | Maize | nucleus | 53.08 | 51.86 |
| EES05874 | Sorghum | nucleus | 53.67 | 51.77 |
| Zm00001d037140_P004 | Maize | nucleus | 50.88 | 50.51 |
| GSMUA_Achr2P15140_001 | Banana | nucleus | 54.69 | 50.47 |
| GSMUA_Achr7P11310_001 | Banana | nucleus | 54.4 | 50.41 |
| Zm00001d044973_P001 | Maize | nucleus | 50.44 | 49.93 |
| EER89393 | Sorghum | nucleus | 50.59 | 49.29 |
| GSMUA_Achr10P... | Banana | nucleus | 48.83 | 48.83 |
| TraesCS7A01G167900.1 | Wheat | nucleus | 47.65 | 44.83 |
| TraesCS7D01G168700.1 | Wheat | nucleus | 47.65 | 44.4 |
| TraesCS7B01G072700.1 | Wheat | nucleus | 47.36 | 44.25 |
| CDY21319 | Canola | nucleus | 46.33 | 44.13 |
| CDX90879 | Canola | nucleus | 46.19 | 43.99 |
| CDY27417 | Canola | nucleus | 45.6 | 43.56 |
| CDY16639 | Canola | nucleus | 46.77 | 43.52 |
| CDX76399 | Canola | nucleus | 45.45 | 43.36 |
| CDX98703 | Canola | nucleus | 44.13 | 43.31 |
| CDX94586 | Canola | nucleus | 46.48 | 43.31 |
| CDX94054 | Canola | nucleus | 43.99 | 43.17 |
| CDY66622 | Canola | nucleus | 46.04 | 42.95 |
| CDY06167 | Canola | nucleus | 44.43 | 42.08 |
| CDX79091 | Canola | nucleus | 45.75 | 41.82 |
| CDY10041 | Canola | nucleus | 44.28 | 40.43 |
| CDY18903 | Canola | nucleus | 40.76 | 39.43 |
| CDX74762 | Canola | nucleus | 40.91 | 39.41 |
| CDY31916 | Canola | nucleus | 38.56 | 39.08 |
| CDY00515 | Canola | nucleus | 38.42 | 38.93 |
| CDY71572 | Canola | nucleus | 22.14 | 38.42 |
| CDY51143 | Canola | nucleus | 44.28 | 38.23 |
| CDY07201 | Canola | nucleus | 43.99 | 38.07 |
| CDX91894 | Canola | nucleus | 44.28 | 38.04 |
| CDX74347 | Canola | nucleus | 43.99 | 37.83 |
| CDY49515 | Canola | plasma membrane | 44.72 | 37.61 |
| CDX67855 | Canola | nucleus | 42.67 | 37.31 |
| CDY45684 | Canola | nucleus | 42.52 | 36.99 |
| CDY46842 | Canola | nucleus | 44.87 | 36.87 |
| CDY48272 | Canola | nucleus | 37.98 | 36.79 |
| CDY23096 | Canola | nucleus | 7.04 | 36.36 |
| CDX85461 | Canola | cytosol | 37.54 | 36.31 |
| CDY12213 | Canola | nucleus | 37.83 | 36.24 |
| CDX76559 | Canola | nucleus | 38.56 | 35.83 |
| CDY62389 | Canola | cytosol | 25.51 | 35.58 |
| CDY08866 | Canola | nucleus | 38.27 | 35.46 |
| CDY19129 | Canola | nucleus | 37.39 | 35.08 |
| CDY30748 | Canola | endoplasmic reticulum | 30.06 | 34.92 |
| CDY33492 | Canola | nucleus | 40.62 | 34.8 |
| CDY02713 | Canola | nucleus | 37.54 | 34.64 |
| CDY53691 | Canola | nucleus | 35.92 | 34.51 |
| CDY15339 | Canola | nucleus | 36.95 | 34.47 |
| CDX77711 | Canola | nucleus | 41.35 | 34.26 |
| CDY43137 | Canola | nucleus | 34.6 | 34.25 |
| CDY67945 | Canola | nucleus | 34.6 | 34.25 |
| CDY42301 | Canola | nucleus | 34.46 | 34.06 |
| CDY16938 | Canola | nucleus | 32.84 | 33.94 |
| CDY43458 | Canola | nucleus | 40.32 | 33.87 |
| CDY03177 | Canola | nucleus | 40.62 | 33.54 |
| CDY44946 | Canola | nucleus | 31.67 | 33.33 |
| CDY49937 | Canola | nucleus | 32.99 | 32.42 |
| CDY21211 | Canola | nucleus | 32.84 | 32.28 |
| CDY69499 | Canola | cytosol | 14.37 | 32.24 |
| CDX67929 | Canola | nucleus | 36.8 | 32.06 |
| CDX79408 | Canola | nucleus | 36.22 | 31.67 |
| CDX89415 | Canola | cytosol, mitochondrion | 7.92 | 30.34 |
| CDY39874 | Canola | plasma membrane | 7.92 | 28.12 |
| TraesCSU01G150000.1 | Wheat | nucleus | 8.5 | 26.61 |
| CDX89416 | Canola | nucleus | 24.63 | 25.89 |
| CDX94443 | Canola | cytosol | 23.02 | 25.0 |
| TraesCSU01G244000.1 | Wheat | nucleus | 6.89 | 22.82 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.3 | Gene3D:3.30.530.20 | GO:A0A078FXR0 | UniProt:A0A078FXR0 | EnsemblPlants:CDY19185 |
| ProteinID:CDY19185 | ProteinID:CDY19185.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008289 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0043565 | EnsemblPlantsGene:GSBRNA2T00006479001 | InterPro:Homeobox-like_sf | InterPro:Homeobox_CS | InterPro:Homeobox_dom | InterPro:IPR001356 |
| InterPro:IPR002913 | InterPro:IPR023393 | PFAM:PF00046 | PFAM:PF01852 | ScanProsite:PS00027 | PFscan:PS50071 |
| PFscan:PS50848 | PANTHER:PTHR24326 | PANTHER:PTHR24326:SF490 | SMART:SM00234 | SMART:SM00389 | SUPFAM:SSF46689 |
| SUPFAM:SSF55961 | InterPro:START-like_dom_sf | InterPro:START_lipid-bd_dom | UniParc:UPI0004EF17FA | SEG:seg | : |
Description
BnaC05g13860DBnaC05g13860D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FXR0]
Coordinates
chrLK032093:-:47087..49879
Molecular Weight (calculated)
75895.6 Da
IEP (calculated)
6.842
GRAVY (calculated)
-0.318
Length
682 amino acids
Sequence
(BLAST)
(BLAST)
001: MEFLGDSSET DKKKMKKRFH RHTPHQIHRL ESSFNECQHP DEKQRLQLSK ELGLSPRQIK FWFQNRRTQK KAQHERADNC ALKEENDRIR CENIAIREAI
101: KHAICLNCGD APLHEDSYFD EQKLRIENAH LREELEKVSS VAAQFMGRPF SHLPPLLNPM HVSPLEFFHS GPSLDFDLLP GSSSSSMPVP PTLPSQPNLV
201: LSDMDKSLMT NIAVTAMEEL LRLTQTNEPL WIKANGCRDV LNLDSYENMF PRSSGRGGKN HNLRKEATRS SGVVFTNAMT LVDMLMDSVK SSELFSSIIA
301: SSKTLAVISS GLRGNHGDAL HLMLEELQVL SPLVPTREFS VLRYCQQIEH GTWAIVNVSY ELPQFITHAR SYRFPSGCLI QDLSNGYSKV SWVEHVEVEE
401: QEPIHEMFKD NVREGIAFGA ERWIATLQRM CERFTALLEP ATSSRDLKGV IPLPEGKQSI MRLAQRMVSN FCLSVGTSNN TRTPVFSGLD AFGIRVTSYK
501: SQHEPNGMVL CAATSFWLPV SPQNVFNYLK DERTRPQWDV LLNGNSVQEV AHIANGSHPG NCISVLRGFN ASSSQNNMLI LQESCVDSSG SLVVYTPADL
601: SALNMAMTGQ DTSYIPILPS GFAIKAEGGG GGGGSLITVG FQIMVSSLQS GKLNMESMET VNNLISTTVH QIKTTLNSPS AA
101: KHAICLNCGD APLHEDSYFD EQKLRIENAH LREELEKVSS VAAQFMGRPF SHLPPLLNPM HVSPLEFFHS GPSLDFDLLP GSSSSSMPVP PTLPSQPNLV
201: LSDMDKSLMT NIAVTAMEEL LRLTQTNEPL WIKANGCRDV LNLDSYENMF PRSSGRGGKN HNLRKEATRS SGVVFTNAMT LVDMLMDSVK SSELFSSIIA
301: SSKTLAVISS GLRGNHGDAL HLMLEELQVL SPLVPTREFS VLRYCQQIEH GTWAIVNVSY ELPQFITHAR SYRFPSGCLI QDLSNGYSKV SWVEHVEVEE
401: QEPIHEMFKD NVREGIAFGA ERWIATLQRM CERFTALLEP ATSSRDLKGV IPLPEGKQSI MRLAQRMVSN FCLSVGTSNN TRTPVFSGLD AFGIRVTSYK
501: SQHEPNGMVL CAATSFWLPV SPQNVFNYLK DERTRPQWDV LLNGNSVQEV AHIANGSHPG NCISVLRGFN ASSSQNNMLI LQESCVDSSG SLVVYTPADL
601: SALNMAMTGQ DTSYIPILPS GFAIKAEGGG GGGGSLITVG FQIMVSSLQS GKLNMESMET VNNLISTTVH QIKTTLNSPS AA
001: MEFLGDSQNH DSSETEKKNK KKKRFHRHTP HQIQRLESTF NECQHPDEKQ RNQLSRELGL APRQIKFWFQ NRRTQKKAQH ERADNCALKE ENDKIRCENI
101: AIREAIKHAI CPSCGDSPVN EDSYFDEQKL RIENAQLRDE LERVSSIAAK FLGRPISHLP PLLNPMHVSP LELFHTGPSL DFDLLPGSCS SMSVPSLPSQ
201: PNLVLSEMDK SLMTNIAVTA MEELLRLLQT NEPLWIKTDG CRDVLNLENY ENMFTRSSTS GGKKNNLGME ASRSSGVVFT NAITLVDMLM NSVKLTELFP
301: SIVASSKTLA VISSGLRGNH GDALHLMIEE LQVLSPLVTT REFCVLRYCQ QIEHGTWAIV NVSYEFPQFI SQSRSYRFPS GCLIQDMSNG YSKVTWVEHG
401: EFEEQEPIHE MFKDIVHKGL AFGAERWIAT LQRMCERFTN LLEPATSSLD LGGVIPSPEG KRSIMRLAHR MVSNFCLSVG TSNNTRSTVV SGLDEFGIRV
501: TSHKSRHEPN GMVLCAATSF WLPISPQNVF NFLKDERTRP QWDVLSNGNS VQEVAHITNG SNPGNCISVL RGFNASSSQN NMLILQESCI DSSSAALVIY
601: TPVDLPALNI AMSGQDTSYI PILPSGFAIS PDGSSKGGGS LITVGFQIMV SGLQPAKLNM ESMETVNNLI NTTVHQIKTT LNCPSTA
101: AIREAIKHAI CPSCGDSPVN EDSYFDEQKL RIENAQLRDE LERVSSIAAK FLGRPISHLP PLLNPMHVSP LELFHTGPSL DFDLLPGSCS SMSVPSLPSQ
201: PNLVLSEMDK SLMTNIAVTA MEELLRLLQT NEPLWIKTDG CRDVLNLENY ENMFTRSSTS GGKKNNLGME ASRSSGVVFT NAITLVDMLM NSVKLTELFP
301: SIVASSKTLA VISSGLRGNH GDALHLMIEE LQVLSPLVTT REFCVLRYCQ QIEHGTWAIV NVSYEFPQFI SQSRSYRFPS GCLIQDMSNG YSKVTWVEHG
401: EFEEQEPIHE MFKDIVHKGL AFGAERWIAT LQRMCERFTN LLEPATSSLD LGGVIPSPEG KRSIMRLAHR MVSNFCLSVG TSNNTRSTVV SGLDEFGIRV
501: TSHKSRHEPN GMVLCAATSF WLPISPQNVF NFLKDERTRP QWDVLSNGNS VQEVAHITNG SNPGNCISVL RGFNASSSQN NMLILQESCI DSSSAALVIY
601: TPVDLPALNI AMSGQDTSYI PILPSGFAIS PDGSSKGGGS LITVGFQIMV SGLQPAKLNM ESMETVNNLI NTTVHQIKTT LNCPSTA
Arabidopsis Description
HDG12Uncharacterized protein At1g17920 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SUW2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.