Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY48272 | Canola | nucleus | 92.42 | 93.47 |
| CDY30748 | Canola | endoplasmic reticulum | 75.56 | 91.65 |
| CDY19129 | Canola | nucleus | 66.85 | 65.47 |
| CDY15339 | Canola | nucleus | 66.57 | 64.84 |
| AT2G32370.1 | Thale cress | nucleus | 55.62 | 54.62 |
| CDY06167 | Canola | nucleus | 53.93 | 53.33 |
| CDY71572 | Canola | nucleus | 28.51 | 51.65 |
| CDY10041 | Canola | nucleus | 53.93 | 51.41 |
| CDX90879 | Canola | nucleus | 50.56 | 50.28 |
| CDY21319 | Canola | nucleus | 50.28 | 50.0 |
| CDY27417 | Canola | nucleus | 49.44 | 49.3 |
| CDX76399 | Canola | nucleus | 49.16 | 48.95 |
| CDY16639 | Canola | nucleus | 50.14 | 48.7 |
| CDY66622 | Canola | nucleus | 49.86 | 48.56 |
| CDX94586 | Canola | nucleus | 49.86 | 48.5 |
| CDX98703 | Canola | nucleus | 46.91 | 48.06 |
| CDX94054 | Canola | nucleus | 46.77 | 47.91 |
| CDY49515 | Canola | plasma membrane | 53.93 | 47.35 |
| CDX79091 | Canola | nucleus | 49.58 | 47.32 |
| CDY46842 | Canola | nucleus | 53.93 | 46.27 |
| PGSC0003DMT400048971 | Potato | nucleus | 35.67 | 44.72 |
| CDY23096 | Canola | nucleus | 8.01 | 43.18 |
| PGSC0003DMT400094124 | Potato | nucleus | 45.65 | 42.99 |
| Solyc12g005830.1.1 | Tomato | nucleus | 42.98 | 40.75 |
| CDY18903 | Canola | nucleus | 39.33 | 39.72 |
| CDX74762 | Canola | nucleus | 39.19 | 39.41 |
| CDX96744 | Canola | nucleus | 36.66 | 38.78 |
| CDY42097 | Canola | nucleus | 28.09 | 38.68 |
| CDY00515 | Canola | nucleus | 36.52 | 38.63 |
| CDY26204 | Canola | nucleus | 34.41 | 38.46 |
| Solyc07g041850.1.1 | Tomato | nucleus | 36.66 | 38.38 |
| CDX67855 | Canola | nucleus | 41.85 | 38.21 |
| CDX96471 | Canola | nucleus | 38.48 | 38.16 |
| CDY31916 | Canola | nucleus | 35.96 | 38.04 |
| CDY45684 | Canola | nucleus | 41.71 | 37.88 |
| CDY19185 | Canola | nucleus | 36.24 | 37.83 |
| CDX72984 | Canola | nucleus | 37.78 | 37.62 |
| CDY26205 | Canola | nucleus | 36.38 | 37.54 |
| CDX83884 | Canola | nucleus | 36.1 | 37.52 |
| CDX68229 | Canola | nucleus | 36.8 | 37.27 |
| CDY07201 | Canola | nucleus | 41.15 | 37.18 |
| CDX74347 | Canola | nucleus | 41.29 | 37.07 |
| CDY51143 | Canola | nucleus | 41.01 | 36.96 |
| CDX91894 | Canola | nucleus | 41.01 | 36.78 |
| CDY11109 | Canola | nucleus | 36.66 | 36.76 |
| CDX89415 | Canola | cytosol, mitochondrion | 8.99 | 35.96 |
| PGSC0003DMT400033830 | Potato | endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 16.43 | 33.24 |
| CDY08866 | Canola | nucleus | 32.72 | 31.66 |
| CDX79408 | Canola | nucleus | 34.55 | 31.54 |
| CDY43458 | Canola | nucleus | 35.96 | 31.53 |
| CDX67929 | Canola | nucleus | 34.55 | 31.42 |
| CDY03177 | Canola | nucleus | 36.38 | 31.36 |
| CDX76559 | Canola | nucleus | 32.3 | 31.34 |
| CDY39874 | Canola | plasma membrane | 8.43 | 31.25 |
| CDX85461 | Canola | cytosol | 30.62 | 30.92 |
| CDX77711 | Canola | nucleus | 35.67 | 30.86 |
| CDY33492 | Canola | nucleus | 34.41 | 30.78 |
| CDY53691 | Canola | nucleus | 30.62 | 30.7 |
| CDY49937 | Canola | nucleus | 29.92 | 30.69 |
| CDY62389 | Canola | cytosol | 21.07 | 30.67 |
| CDY21211 | Canola | nucleus | 29.63 | 30.4 |
| CDY44946 | Canola | nucleus | 27.67 | 30.4 |
| CDY43137 | Canola | nucleus | 29.21 | 30.19 |
| CDY67945 | Canola | nucleus | 29.21 | 30.19 |
| CDX94443 | Canola | cytosol | 26.54 | 30.1 |
| CDY16938 | Canola | nucleus | 27.81 | 30.0 |
| CDX89416 | Canola | nucleus | 27.25 | 29.89 |
| CDY02713 | Canola | nucleus | 30.9 | 29.77 |
| CDY42301 | Canola | nucleus | 28.51 | 29.42 |
| CDY69499 | Canola | cytosol | 12.5 | 29.28 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.3 | GO:A0A078FJB9 | UniProt:A0A078FJB9 | EnsemblPlants:CDY12213 | ProteinID:CDY12213 |
| ProteinID:CDY12213.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008289 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 |
| EnsemblPlantsGene:GSBRNA2T00061232001 | InterPro:Homeobox-like_sf | InterPro:Homeobox_CS | InterPro:Homeobox_dom | InterPro:IPR001356 | InterPro:IPR002913 |
| PFAM:PF00046 | PFAM:PF01852 | ScanProsite:PS00027 | PFscan:PS50071 | PFscan:PS50848 | PANTHER:PTHR24326 |
| PANTHER:PTHR24326:SF320 | SMART:SM00234 | SMART:SM00389 | SUPFAM:SSF46689 | SUPFAM:SSF55961 | InterPro:START_lipid-bd_dom |
| UniParc:UPI0004EE436B | SEG:seg | : | : | : | : |
Description
BnaC04g12430DBnaC04g12430D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FJB9]
Coordinates
chrLK032018:-:460587..464080
Molecular Weight (calculated)
79599.3 Da
IEP (calculated)
6.009
GRAVY (calculated)
-0.494
Length
712 amino acids
Sequence
(BLAST)
(BLAST)
001: MSLPNYMEPV DDVNNNNNGD TDNNENENNN NMNGGASFGD EEFDSENQED GNTQNPRAGK RKRYHRHTQQ QIQEMENFFK ECPHPDDNQR KELSRHLGLD
101: HLQIKFWFQN KRTQNKNHQE RHENLQLREE NTRLRADNHH FREALANASC PNCGGRTAVG EMSFEEHHLH LENAKLTEEI RQLSEVAKYT GKAVMRYPVL
201: PTPNQAPPFE PPMTTNGSIG NLSLSNIGSV KEADRPLVIE LAVGAMSELI ALAQMNEPLW KGGVHGTILD LNEYTRNLQN GLGPKQVGFR TEASRETAIV
301: FMHHMDIVHR LMDVNVWSTM FAGMVGRAMT HDTLLTGGQG NLDGTIHLMT AEFQVLSPLV SSRECYFVRY CKQHGEGLWG VVDISIDHLI PNLEPKCRRR
401: PSGCLIQDMP NRFSRVTWVE HVEVDDRGEL HAMFKNLLNS GQALGANRWV STLDRQCERL AIMMASNIPS IEPGGQITVT NNAKQSLLKL VERMSRGFFD
501: GVTTSTADIW WNLAEYTGDS VSVMTRKSLN DPGRPEGLIL CAAHSFWVPV PPITVFDYLR DEKNRTNWDV LFLGGNPQKL THIFNGRDDR NCVSLLRSPN
601: TSQSEMMMIE ESSTEPAASF LVYAPVDVPS MEKVLNGGDP KCVPLLPSGF AILPDGTAQP GKAGGSLVNV SFQMLVDSSP SGMLTFSSVS TIESLILAAA
701: NKIKAYFTQQ TA
101: HLQIKFWFQN KRTQNKNHQE RHENLQLREE NTRLRADNHH FREALANASC PNCGGRTAVG EMSFEEHHLH LENAKLTEEI RQLSEVAKYT GKAVMRYPVL
201: PTPNQAPPFE PPMTTNGSIG NLSLSNIGSV KEADRPLVIE LAVGAMSELI ALAQMNEPLW KGGVHGTILD LNEYTRNLQN GLGPKQVGFR TEASRETAIV
301: FMHHMDIVHR LMDVNVWSTM FAGMVGRAMT HDTLLTGGQG NLDGTIHLMT AEFQVLSPLV SSRECYFVRY CKQHGEGLWG VVDISIDHLI PNLEPKCRRR
401: PSGCLIQDMP NRFSRVTWVE HVEVDDRGEL HAMFKNLLNS GQALGANRWV STLDRQCERL AIMMASNIPS IEPGGQITVT NNAKQSLLKL VERMSRGFFD
501: GVTTSTADIW WNLAEYTGDS VSVMTRKSLN DPGRPEGLIL CAAHSFWVPV PPITVFDYLR DEKNRTNWDV LFLGGNPQKL THIFNGRDDR NCVSLLRSPN
601: TSQSEMMMIE ESSTEPAASF LVYAPVDVPS MEKVLNGGDP KCVPLLPSGF AILPDGTAQP GKAGGSLVNV SFQMLVDSSP SGMLTFSSVS TIESLILAAA
701: NKIKAYFTQQ TA
001: MFEPNMLLAA MNNADSNNHN YNHEDNNNEG FLRDDEFDSP NTKSGSENQE GGSGNDQDPL HPNKKKRYHR HTQLQIQEME AFFKECPHPD DKQRKQLSRE
101: LNLEPLQVKF WFQNKRTQMK NHHERHENSH LRAENEKLRN DNLRYREALA NASCPNCGGP TAIGEMSFDE HQLRLENARL REEIDRISAI AAKYVGKPVS
201: NYPLMSPPPL PPRPLELAMG NIGGEAYGNN PNDLLKSITA PTESDKPVII DLSVAAMEEL MRMVQVDEPL WKSLVLDEEE YARTFPRGIG PRPAGYRSEA
301: SRESAVVIMN HVNIVEILMD VNQWSTIFAG MVSRAMTLAV LSTGVAGNYN GALQVMSAEF QVPSPLVPTR ETYFARYCKQ QGDGSWAVVD ISLDSLQPNP
401: PARCRRRASG CLIQELPNGY SKVTWVEHVE VDDRGVHNLY KHMVSTGHAF GAKRWVAILD RQCERLASVM ATNISSGEVG VITNQEGRRS MLKLAERMVI
501: SFCAGVSAST AHTWTTLSGT GAEDVRVMTR KSVDDPGRPP GIVLSAATSF WIPVPPKRVF DFLRDENSRN EWDILSNGGV VQEMAHIANG RDTGNCVSLL
601: RVNSANSSQS NMLILQESCT DPTASFVIYA PVDIVAMNIV LNGGDPDYVA LLPSGFAILP DGNANSGAPG GDGGSLLTVA FQILVDSVPT AKLSLGSVAT
701: VNNLIACTVE RIKASMSCET A
101: LNLEPLQVKF WFQNKRTQMK NHHERHENSH LRAENEKLRN DNLRYREALA NASCPNCGGP TAIGEMSFDE HQLRLENARL REEIDRISAI AAKYVGKPVS
201: NYPLMSPPPL PPRPLELAMG NIGGEAYGNN PNDLLKSITA PTESDKPVII DLSVAAMEEL MRMVQVDEPL WKSLVLDEEE YARTFPRGIG PRPAGYRSEA
301: SRESAVVIMN HVNIVEILMD VNQWSTIFAG MVSRAMTLAV LSTGVAGNYN GALQVMSAEF QVPSPLVPTR ETYFARYCKQ QGDGSWAVVD ISLDSLQPNP
401: PARCRRRASG CLIQELPNGY SKVTWVEHVE VDDRGVHNLY KHMVSTGHAF GAKRWVAILD RQCERLASVM ATNISSGEVG VITNQEGRRS MLKLAERMVI
501: SFCAGVSAST AHTWTTLSGT GAEDVRVMTR KSVDDPGRPP GIVLSAATSF WIPVPPKRVF DFLRDENSRN EWDILSNGGV VQEMAHIANG RDTGNCVSLL
601: RVNSANSSQS NMLILQESCT DPTASFVIYA PVDIVAMNIV LNGGDPDYVA LLPSGFAILP DGNANSGAPG GDGGSLLTVA FQILVDSVPT AKLSLGSVAT
701: VNNLIACTVE RIKASMSCET A
Arabidopsis Description
HDG2AT1G05230 protein [Source:UniProtKB/TrEMBL;Acc:B9DFH8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.