Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY71572 | Canola | nucleus | 52.34 | 99.49 |
| CDY06167 | Canola | nucleus | 94.24 | 97.78 |
| AT1G05230.5 | Thale cress | nucleus | 91.7 | 95.01 |
| CDY49515 | Canola | plasma membrane | 92.37 | 85.08 |
| CDY46842 | Canola | nucleus | 91.97 | 82.77 |
| KRH56105 | Soybean | nucleus | 77.64 | 79.56 |
| VIT_12s0059g02310.t01 | Wine grape | nucleus | 77.11 | 76.09 |
| KRH25398 | Soybean | plastid | 77.38 | 75.95 |
| GSMUA_Achr3P23090_001 | Banana | endoplasmic reticulum, plasma membrane | 66.0 | 74.7 |
| KRH22554 | Soybean | nucleus | 77.64 | 74.26 |
| KRH26803 | Soybean | nucleus | 77.11 | 73.75 |
| CDX90879 | Canola | nucleus | 69.21 | 72.21 |
| CDY21319 | Canola | nucleus | 69.08 | 72.07 |
| Os04t0627000-02 | Rice | cytosol, peroxisome | 56.22 | 71.67 |
| CDY16639 | Canola | nucleus | 69.48 | 70.8 |
| CDX94586 | Canola | nucleus | 69.34 | 70.77 |
| CDX98703 | Canola | nucleus | 65.6 | 70.5 |
| CDX94054 | Canola | nucleus | 65.19 | 70.07 |
| CDY27417 | Canola | nucleus | 66.8 | 69.89 |
| CDX76399 | Canola | nucleus | 66.67 | 69.65 |
| GSMUA_Achr8P07310_001 | Banana | mitochondrion, nucleus | 67.2 | 69.15 |
| CDY66622 | Canola | nucleus | 66.93 | 68.4 |
| GSMUA_Achr10P... | Banana | nucleus | 64.66 | 67.55 |
| CDX79091 | Canola | nucleus | 67.34 | 67.43 |
| EES11464 | Sorghum | nucleus | 69.88 | 66.16 |
| TraesCS2B01G497500.1 | Wheat | nucleus | 67.2 | 64.77 |
| TraesCS2D01G473700.1 | Wheat | nucleus | 67.2 | 64.69 |
| GSMUA_Achr11P... | Banana | plastid | 68.27 | 64.64 |
| TraesCS2A01G474000.1 | Wheat | nucleus | 67.2 | 64.61 |
| EES13460 | Sorghum | mitochondrion, nucleus | 67.47 | 64.53 |
| Os08t0136100-01 | Rice | nucleus | 67.74 | 64.46 |
| Zm00001d049443_P005 | Maize | nucleus | 68.01 | 63.82 |
| Zm00001d002234_P003 | Maize | nucleus | 67.74 | 63.73 |
| TraesCS7B01G208600.1 | Wheat | nucleus | 65.73 | 61.53 |
| TraesCS7A01G308400.1 | Wheat | nucleus | 65.46 | 61.43 |
| CDY23096 | Canola | nucleus | 10.84 | 61.36 |
| TraesCS7D01G305200.1 | Wheat | nucleus | 65.33 | 61.31 |
| Zm00001d026351_P003 | Maize | nucleus | 69.08 | 61.14 |
| Zm00001d000247_P001 | Maize | plasma membrane | 58.23 | 60.5 |
| Zm00001d024701_P001 | Maize | nucleus | 63.86 | 59.85 |
| EES14500 | Sorghum | nucleus | 64.93 | 59.58 |
| CDY12213 | Canola | nucleus | 51.41 | 53.93 |
| CDY48272 | Canola | nucleus | 50.6 | 53.69 |
| CDY30748 | Canola | endoplasmic reticulum | 41.77 | 53.15 |
| CDY19129 | Canola | nucleus | 48.86 | 50.21 |
| CDY15339 | Canola | nucleus | 49.0 | 50.07 |
| CDY18903 | Canola | nucleus | 45.25 | 47.94 |
| CDX74762 | Canola | nucleus | 45.38 | 47.88 |
| CDY51143 | Canola | nucleus | 49.53 | 46.84 |
| CDX96744 | Canola | nucleus | 42.17 | 46.81 |
| CDX67855 | Canola | nucleus | 48.86 | 46.79 |
| CDY07201 | Canola | nucleus | 49.26 | 46.7 |
| CDX91894 | Canola | nucleus | 49.53 | 46.6 |
| CDY45684 | Canola | nucleus | 48.86 | 46.56 |
| CDX74347 | Canola | nucleus | 49.4 | 46.53 |
| CDX68229 | Canola | nucleus | 43.51 | 46.23 |
| CDY11109 | Canola | nucleus | 43.51 | 45.77 |
| CDX96471 | Canola | nucleus | 43.91 | 45.68 |
| CDX83884 | Canola | nucleus | 41.63 | 45.4 |
| CDX72984 | Canola | nucleus | 43.24 | 45.17 |
| CDY26204 | Canola | nucleus | 38.29 | 44.9 |
| CDY42097 | Canola | nucleus | 30.92 | 44.68 |
| CDY19185 | Canola | nucleus | 40.43 | 44.28 |
| CDY26205 | Canola | nucleus | 40.83 | 44.2 |
| CDY31916 | Canola | nucleus | 39.36 | 43.69 |
| CDY00515 | Canola | nucleus | 39.09 | 43.39 |
| Os08t0187500-01 | Rice | nucleus | 18.61 | 42.64 |
| CDX89415 | Canola | cytosol, mitochondrion | 10.04 | 42.13 |
| CDY43458 | Canola | nucleus | 41.9 | 38.55 |
| CDX76559 | Canola | nucleus | 37.75 | 38.42 |
| CDY03177 | Canola | nucleus | 42.03 | 38.01 |
| CDY08866 | Canola | nucleus | 37.35 | 37.91 |
| CDX77711 | Canola | nucleus | 41.23 | 37.42 |
| CDX67929 | Canola | nucleus | 39.22 | 37.42 |
| CDY33492 | Canola | nucleus | 39.76 | 37.31 |
| CDX79408 | Canola | nucleus | 38.96 | 37.31 |
| CDX85461 | Canola | cytosol | 32.8 | 34.75 |
| CDY67945 | Canola | nucleus | 31.86 | 34.54 |
| CDY42301 | Canola | nucleus | 31.86 | 34.49 |
| CDY43137 | Canola | nucleus | 31.19 | 33.82 |
| CDY62389 | Canola | cytosol | 21.95 | 33.54 |
| CDY44946 | Canola | nucleus | 29.05 | 33.49 |
| CDY53691 | Canola | nucleus | 31.33 | 32.96 |
| CDY02713 | Canola | nucleus | 32.53 | 32.88 |
| CDY39874 | Canola | plasma membrane | 8.43 | 32.81 |
| CDY69499 | Canola | cytosol | 13.25 | 32.57 |
| CDY16938 | Canola | nucleus | 28.38 | 32.12 |
| CDY49937 | Canola | nucleus | 29.59 | 31.84 |
| CDX89416 | Canola | nucleus | 27.44 | 31.59 |
| CDY21211 | Canola | nucleus | 29.32 | 31.56 |
| CDX94443 | Canola | cytosol | 25.57 | 30.41 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.3 | GO:A0A078F9M3 | UniProt:A0A078F9M3 | EnsemblPlants:CDY10041 | ProteinID:CDY10041 |
| ProteinID:CDY10041.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0008289 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 | EnsemblPlantsGene:GSBRNA2T00031829001 |
| InterPro:Homeobox-like_sf | InterPro:Homeobox_CS | InterPro:Homeobox_dom | InterPro:IPR001356 | InterPro:IPR002913 | PFAM:PF00046 |
| PFAM:PF01852 | ScanProsite:PS00027 | PFscan:PS50071 | PFscan:PS50848 | PANTHER:PTHR24326 | PANTHER:PTHR24326:SF513 |
| SMART:SM00234 | SMART:SM00389 | SUPFAM:SSF46689 | SUPFAM:SSF55961 | InterPro:START_lipid-bd_dom | UniParc:UPI0004EDEE2D |
| SEG:seg | : | : | : | : | : |
Description
BnaC08g44100DBnaC08g44100D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F9M3]
Coordinates
chrLK032000:+:585754..594940
Molecular Weight (calculated)
82749.3 Da
IEP (calculated)
6.099
GRAVY (calculated)
-0.377
Length
747 amino acids
Sequence
(BLAST)
(BLAST)
001: MFEPNMLLAA MNNEDSNNHS YNHEVNNNNN EGFLRDDEFD SANTKSGSEN QEGGSGNDQD PLHPNKKKRY HRHTQLQIQE MEAFFKECPH PDDKQRKQLS
101: RELGLEPLQV KFWFQNKRTQ MKNHLKRFGL MFLRYANMGK HNTCTQAYYN HHERHENSHL RAENEKLRGD NLRYREALAN ASCPNCGGPT AIGEMSFDEH
201: QLRLENSRLR EEIDRISAIA AKYVGKPVSN YPLMSPPPLP PRPLELAMGN SGGDVYGNNP TDQFKSIIAP TESDKPVIID LAVVAMEELM RMVQVDEPLW
301: NSLVLDEEEY ARTFPRGIGP KPAGFRSEAS RESAVVIMNH ISIVEILMDV NQWSMLFAGM VSRAMTLAVL STGVAGNYNG ALQVMTAEFQ VPTPLVPTRE
401: TYFARYCKQQ ADGSWAVVDI YLDSLQPNPP VRCRRRASGC LIQEMPNGYS KVTWVEHVEV DDRGVHDLYK HMVSTGHAFG AKRWVAILDR QCERLASVMA
501: TNISPGEVGV ITNQEGRRSM LKLAERMVIS FCAGVSASTA HTWTTLSGTG AEDVRVMTRK SVDDPGRPPG IVLSAATSFW IPVPPKRVFD FLRDENSRNE
601: WDILSNGGVV QEMAHIANGR DTGNCVSLLR VNSANSSQSN MLILQESCTD PTASFVIYAP VDIVAMNIVL NGGDPDYVAL LPSGFAILPD GNANGGGEGG
701: SLLTVAFQIL VDSVPTAKLS LGSVATVNNL IACTVERIKA SMSCETA
101: RELGLEPLQV KFWFQNKRTQ MKNHLKRFGL MFLRYANMGK HNTCTQAYYN HHERHENSHL RAENEKLRGD NLRYREALAN ASCPNCGGPT AIGEMSFDEH
201: QLRLENSRLR EEIDRISAIA AKYVGKPVSN YPLMSPPPLP PRPLELAMGN SGGDVYGNNP TDQFKSIIAP TESDKPVIID LAVVAMEELM RMVQVDEPLW
301: NSLVLDEEEY ARTFPRGIGP KPAGFRSEAS RESAVVIMNH ISIVEILMDV NQWSMLFAGM VSRAMTLAVL STGVAGNYNG ALQVMTAEFQ VPTPLVPTRE
401: TYFARYCKQQ ADGSWAVVDI YLDSLQPNPP VRCRRRASGC LIQEMPNGYS KVTWVEHVEV DDRGVHDLYK HMVSTGHAFG AKRWVAILDR QCERLASVMA
501: TNISPGEVGV ITNQEGRRSM LKLAERMVIS FCAGVSASTA HTWTTLSGTG AEDVRVMTRK SVDDPGRPPG IVLSAATSFW IPVPPKRVFD FLRDENSRNE
601: WDILSNGGVV QEMAHIANGR DTGNCVSLLR VNSANSSQSN MLILQESCTD PTASFVIYAP VDIVAMNIVL NGGDPDYVAL LPSGFAILPD GNANGGGEGG
701: SLLTVAFQIL VDSVPTAKLS LGSVATVNNL IACTVERIKA SMSCETA
001: MFEPNMLLAA MNNADSNNHN YNHEDNNNEG FLRDDEFDSP NTKSGSENQE GGSGNDQDPL HPNKKKRYHR HTQLQIQEME AFFKECPHPD DKQRKQLSRE
101: LNLEPLQVKF WFQNKRTQMK NHHERHENSH LRAENEKLRN DNLRYREALA NASCPNCGGP TAIGEMSFDE HQLRLENARL REEIDRISAI AAKYVGKPVS
201: NYPLMSPPPL PPRPLELAMG NIGGEAYGNN PNDLLKSITA PTESDKPVII DLSVAAMEEL MRMVQVDEPL WKSLVLDEEE YARTFPRGIG PRPAGYRSEA
301: SRESAVVIMN HVNIVEILMD VNQWSTIFAG MVSRAMTLAV LSTGVAGNYN GALQVMSAEF QVPSPLVPTR ETYFARYCKQ QGDGSWAVVD ISLDSLQPNP
401: PARCRRRASG CLIQELPNGY SKVTWVEHVE VDDRGVHNLY KHMVSTGHAF GAKRWVAILD RQCERLASVM ATNISSGEVG VITNQEGRRS MLKLAERMVI
501: SFCAGVSAST AHTWTTLSGT GAEDVRVMTR KSVDDPGRPP GIVLSAATSF WIPVPPKRVF DFLRDENSRN EWDILSNGGV VQEMAHIANG RDTGNCVSLL
601: RVNSANSSQS NMLILQESCT DPTASFVIYA PVDIVAMNIV LNGGDPDYVA LLPSGFAILP DGNANSGAPG GDGGSLLTVA FQILVDSVPT AKLSLGSVAT
701: VNNLIACTVE RIKASMSCET A
101: LNLEPLQVKF WFQNKRTQMK NHHERHENSH LRAENEKLRN DNLRYREALA NASCPNCGGP TAIGEMSFDE HQLRLENARL REEIDRISAI AAKYVGKPVS
201: NYPLMSPPPL PPRPLELAMG NIGGEAYGNN PNDLLKSITA PTESDKPVII DLSVAAMEEL MRMVQVDEPL WKSLVLDEEE YARTFPRGIG PRPAGYRSEA
301: SRESAVVIMN HVNIVEILMD VNQWSTIFAG MVSRAMTLAV LSTGVAGNYN GALQVMSAEF QVPSPLVPTR ETYFARYCKQ QGDGSWAVVD ISLDSLQPNP
401: PARCRRRASG CLIQELPNGY SKVTWVEHVE VDDRGVHNLY KHMVSTGHAF GAKRWVAILD RQCERLASVM ATNISSGEVG VITNQEGRRS MLKLAERMVI
501: SFCAGVSAST AHTWTTLSGT GAEDVRVMTR KSVDDPGRPP GIVLSAATSF WIPVPPKRVF DFLRDENSRN EWDILSNGGV VQEMAHIANG RDTGNCVSLL
601: RVNSANSSQS NMLILQESCT DPTASFVIYA PVDIVAMNIV LNGGDPDYVA LLPSGFAILP DGNANSGAPG GDGGSLLTVA FQILVDSVPT AKLSLGSVAT
701: VNNLIACTVE RIKASMSCET A
Arabidopsis Description
HDG2AT1G05230 protein [Source:UniProtKB/TrEMBL;Acc:B9DFH8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.