Factsheet for GSMUA_Achr3P23090_001

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, plasma membrane

Predictor Summary:

nucleus 3
extracellular 4
endoplasmic reticulum 5
vacuole 4
plasma membrane 5
golgi 4
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, plasma membrane
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os04t0627000-02	Rice	cytosol, peroxisome	71.21	80.2
KRH13175	Soybean	cytosol	21.06	78.53
GSMUA_Achr8P07310_001	Banana	mitochondrion, nucleus	85.15	77.41
Solyc03g031760.2.1	Tomato	cytosol	73.33	76.95
PGSC0003DMT400061859	Potato	nucleus	78.79	75.47
VIT_10s0116g00680.t01	Wine grape	nucleus	81.36	73.97
PGSC0003DMT400029291	Potato	nucleus	76.21	72.17
CDX90879	Canola	nucleus	77.12	71.09
KRH56105	Soybean	nucleus	78.48	71.06
GSMUA_Achr11P...	Banana	plastid	84.85	70.98
CDY21319	Canola	nucleus	76.97	70.95
Solyc10g005330.2.1	Tomato	nucleus	75.91	70.37
CDX98703	Canola	nucleus	73.94	70.22
CDY27417	Canola	nucleus	75.76	70.03
VIT_12s0059g02310.t01	Wine grape	nucleus	80.3	70.01
CDX94054	Canola	nucleus	73.64	69.93
Bra000807.1-P	Field mustard	nucleus	62.88	69.51
AT1G05230.5	Thale cress	nucleus	75.76	69.35
AT4G04890.1	Thale cress	nucleus	78.03	69.31
CDX76399	Canola	nucleus	75.0	69.23
CDY16639	Canola	nucleus	76.82	69.17
CDX94586	Canola	nucleus	76.67	69.13
CDY06167	Canola	nucleus	75.0	68.75
Bra029527.1-P	Field mustard	nucleus	77.58	68.72
Bra032478.1-P	Field mustard	nucleus	74.85	68.71
Bra015401.1-P	Field mustard	nucleus	74.7	68.47
GSMUA_Achr10P...	Banana	nucleus	74.09	68.39
KRH27601	Soybean	nucleus	75.61	68.17
EES11464	Sorghum	nucleus	81.36	68.06
PGSC0003DMT400005277	Potato	nucleus	75.45	67.94
KRH77881	Soybean	nucleus	75.15	67.85
KRH25398	Soybean	plastid	78.18	67.81
AT4G21750.3	Thale cress	nucleus	78.18	67.72
CDY66622	Canola	nucleus	74.7	67.44
Bra038757.1-P	Field mustard	nucleus	73.64	67.03
Bra020872.1-P	Field mustard	nucleus	75.76	66.84
EES13460	Sorghum	mitochondrion, nucleus	79.09	66.84
KRH26803	Soybean	nucleus	78.94	66.71
KRH22554	Soybean	nucleus	78.94	66.71
CDX79091	Canola	nucleus	75.3	66.62
CDY10041	Canola	nucleus	74.7	66.0
TraesCS2D01G473700.1	Wheat	nucleus	77.58	65.98
TraesCS2B01G497500.1	Wheat	nucleus	77.42	65.94
Solyc02g080260.2.1	Tomato	nucleus	75.0	65.91
HORVU2Hr1G106970.2	Barley	nucleus, plastid	77.58	65.89
Zm00001d002234_P003	Maize	nucleus	79.24	65.87
TraesCS2A01G474000.1	Wheat	nucleus	77.42	65.77
Zm00001d049443_P005	Maize	nucleus	78.64	65.2
Os08t0136100-01	Rice	nucleus	76.21	64.08
Bra013556.1-P	Field mustard	nucleus	66.21	63.33
Zm00001d026351_P003	Maize	nucleus	80.91	63.27
Zm00001d000247_P001	Maize	plasma membrane	67.58	62.03
TraesCS7A01G308400.1	Wheat	nucleus	74.55	61.81
HORVU7Hr1G073440.1	Barley	nucleus	74.24	61.56
TraesCS7D01G305200.1	Wheat	nucleus	74.09	61.43
TraesCS7B01G208600.1	Wheat	nucleus	74.24	61.4
Zm00001d024701_P001	Maize	nucleus	74.09	61.36
EES14500	Sorghum	nucleus	75.61	61.3
CDY49515	Canola	plasma membrane	74.55	60.67
CDY46842	Canola	nucleus	74.7	59.4
HORVU7Hr1G073450.1	Barley	mitochondrion, nucleus	71.21	59.05
KRG91238	Soybean	nucleus	62.88	56.77
CDY71572	Canola	nucleus	33.64	56.49
GSMUA_Achr7P00210_001	Banana	nucleus	55.45	53.9
KRH35579	Soybean	nucleus	62.27	52.83
GSMUA_Achr1P18760_001	Banana	nucleus	53.48	46.69
GSMUA_Achr11P...	Banana	nucleus	52.12	46.24
GSMUA_Achr10P...	Banana	nucleus	49.39	45.85
GSMUA_Achr5P20050_001	Banana	nucleus	54.7	45.41
VIT_19s0177g00240.t01	Wine grape	cytosol, mitochondrion	16.21	45.15
GSMUA_Achr11P...	Banana	nucleus	52.88	44.97
GSMUA_Achr5P10510_001	Banana	nucleus	53.79	44.65
GSMUA_AchrUn_...	Banana	nucleus	51.97	44.6
GSMUA_Achr6P05990_001	Banana	nucleus	40.61	44.44
GSMUA_Achr7P11310_001	Banana	nucleus	48.48	43.48
GSMUA_Achr3P12410_001	Banana	nucleus	48.48	43.13
GSMUA_Achr10P...	Banana	nucleus	43.64	42.23
GSMUA_Achr2P15140_001	Banana	nucleus	47.12	42.08
PGSC0003DMT400037397	Potato	cytosol	30.91	41.55
GSMUA_Achr5P14100_001	Banana	nucleus	46.52	40.61
Solyc10g006420.2.1	Tomato	cytosol	32.27	40.42
GSMUA_Achr4P19010_001	Banana	nucleus	47.42	39.08
KRH22254	Soybean	cytosol	31.21	38.5
GSMUA_Achr3P15400_001	Banana	nucleus	42.27	37.25
CDY23096	Canola	nucleus	7.42	37.12
KRH27078	Soybean	extracellular, golgi, peroxisome	17.73	35.45
Os08t0187500-01	Rice	nucleus	17.42	35.28
GSMUA_Achr8P27340_001	Banana	nucleus	39.85	35.11

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.3	Gene3D:3.30.530.20	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0008289	GO:GO:0009058
GO:GO:0009987	GO:GO:0043565	EnsemblPlantsGene:GSMUA_Achr3G23090_001	EnsemblPlants:GSMUA_Achr3P23090_001	EnsemblPlants:GSMUA_Achr3T23090_001	InterPro:Homeobox-like_sf
InterPro:Homeobox_CS	InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:IPR002913	InterPro:IPR023393	UniProt:M0SH25
PFAM:PF00046	PFAM:PF01852	ScanProsite:PS00027	PFscan:PS50071	PFscan:PS50848	PANTHER:PTHR24326
PANTHER:PTHR24326:SF349	SMART:SM00234	SMART:SM00389	SUPFAM:SSF46689	SUPFAM:SSF55961	InterPro:START-like_dom_sf
InterPro:START_lipid-bd_dom	UniParc:UPI000296B4C3	SEG:seg	:	:	:

Description

Homeobox-leucine zipper protein ROC2 [Source:GMGC_GENE;Acc:GSMUA_Achr3G23090_001]

Coordinates

chr3:+:23918711..23921733

Molecular Weight (calculated)

72321.5 Da

IEP (calculated)

6.120

GRAVY (calculated)

-0.147

Length

660 amino acids

Sequence
(BLAST)

001: MNSFYKPFFI VFNAFITNHI TCCHVAFSFF KECPHPDDKQ RKELSRELGL EPLQVKFWFQ NKRTQMKNQH ERQENNQLRA DNERLRAENL RYKEALSNAS
101: CPNCGGPASL GEMSFDEHHL RIENARLREE IDRISGIAAK YVGKPMASYP LLSPSMFGPG ELMRSVSGAA ETDKPMVVEL AVAAMEELIR MAQLNEPLWI
201: PAALDNATEA LNEEEYVRTF PRGIGPRPFG LKSEASRETA VVIMNQMNVV EILMDVNQWS NVFSGIVSRA MTLEVLSTGV AGNYNGALQV MTAEFQVPSP
301: LVPTRESLFV RYCKQHADGT WAVVDVSLDS LRPSPVLRCR RRPSGCLIQE LPNGYSKVTW VEHVEVDDRS VHSIYKPLVN SGLAFGARRW VSTLDRQCER
401: LASVMASNIP SGDVGVITTP EGRKSMLKLA ERMVMSFCGG VSASTTHQWT TLSGSGAEDV RVMTRKSVDD PGRPPGIVLN AATSFWLPVP PKRVFDFLRD
501: ESSRSEWDIL SNGGGVQEMA HIANGQDHGN CVSLLRVNST NSNQSNMLIL QESCTDATGS YVIYAPVDVI AMNVVLNGGD PDYVALLPSG FAILPDGPCG
601: SGGRVEEVGS GGSLLTVAFQ ILVDSVPTAK LSLGSVATVN SLIACTVERI KASVAGEVAR

Best Arabidopsis Sequence Match ( AT4G04890.1 )
(BLAST)

001: MYHPNMFESH HMFDMTPKST SDNDLGITGS REDDFETKSG TEVTTENPSG EELQDPSQRP NKKKRYHRHT QRQIQELESF FKECPHPDDK QRKELSRDLN
101: LEPLQVKFWF QNKRTQMKAQ SERHENQILK SDNDKLRAEN NRYKEALSNA TCPNCGGPAA IGEMSFDEQH LRIENARLRE EIDRISAIAA KYVGKPLGSS
201: FAPLAIHAPS RSLDLEVGNF GNQTGFVGEM YGTGDILRSV SIPSETDKPI IVELAVAAME ELVRMAQTGD PLWLSTDNSV EILNEEEYFR TFPRGIGPKP
301: LGLRSEASRQ SAVVIMNHIN LVEILMDVNQ WSCVFSGIVS RALTLEVLST GVAGNYNGAL QVMTAEFQVP SPLVPTRENY FVRYCKQHSD GSWAVVDVSL
401: DSLRPSTPIL RTRRRPSGCL IQELPNGYSK VTWIEHMEVD DRSVHNMYKP LVQSGLAFGA KRWVATLERQ CERLASSMAS NIPGDLSVIT SPEGRKSMLK
501: LAERMVMSFC SGVGASTAHA WTTMSTTGSD DVRVMTRKSM DDPGRPPGIV LSAATSFWIP VAPKRVFDFL RDENSRKEWD ILSNGGMVQE MAHIANGHEP
601: GNCVSLLRVN SGNSSQSNML ILQESCTDAS GSYVIYAPVD IVAMNVVLSG GDPDYVALLP SGFAILPDGS VGGGDGNQHQ EMVSTTSSGS CGGSLLTVAF
701: QILVDSVPTA KLSLGSVATV NSLIKCTVER IKAAVSCDVG GGA

Arabidopsis Description

PDF2Homeobox-leucine zipper protein PROTODERMAL FACTOR 2 [Source:UniProtKB/Swiss-Prot;Acc:Q93V99]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.