Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 3
- plastid 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os04t0627000-02 | Rice | cytosol, peroxisome | 45.15 | 18.26 |
| GSMUA_Achr3P23090_001 | Banana | endoplasmic reticulum, plasma membrane | 45.15 | 16.21 |
| GSMUA_Achr8P07310_001 | Banana | mitochondrion, nucleus | 46.84 | 15.29 |
| GSMUA_Achr10P... | Banana | nucleus | 45.57 | 15.1 |
| VIT_10s0116g00680.t01 | Wine grape | nucleus | 45.57 | 14.88 |
| KRH22254 | Soybean | cytosol | 33.33 | 14.77 |
| PGSC0003DMT400037397 | Potato | cytosol | 30.38 | 14.66 |
| VIT_12s0059g02310.t01 | Wine grape | nucleus | 46.41 | 14.53 |
| EES13460 | Sorghum | mitochondrion, nucleus | 46.84 | 14.21 |
| Os08t0136100-01 | Rice | nucleus | 46.84 | 14.14 |
| Zm00001d049443_P005 | Maize | nucleus | 46.84 | 13.94 |
| EES11464 | Sorghum | nucleus | 46.41 | 13.94 |
| TraesCS2B01G497500.1 | Wheat | nucleus | 45.57 | 13.94 |
| TraesCS2D01G473700.1 | Wheat | nucleus | 45.57 | 13.92 |
| TraesCS2A01G474000.1 | Wheat | nucleus | 45.15 | 13.77 |
| Zm00001d002234_P003 | Maize | nucleus | 45.99 | 13.73 |
| Solyc10g006420.2.1 | Tomato | cytosol | 29.96 | 13.47 |
| TraesCS7D01G305200.1 | Wheat | nucleus | 44.73 | 13.32 |
| GSMUA_Achr11P... | Banana | plastid | 44.3 | 13.31 |
| Zm00001d024701_P001 | Maize | nucleus | 44.73 | 13.3 |
| Zm00001d026351_P003 | Maize | nucleus | 47.26 | 13.27 |
| EES14500 | Sorghum | nucleus | 45.57 | 13.27 |
| TraesCS7A01G308400.1 | Wheat | nucleus | 44.3 | 13.19 |
| TraesCS7B01G208600.1 | Wheat | nucleus | 44.3 | 13.16 |
| Zm00001d000247_P001 | Maize | plasma membrane | 38.4 | 12.66 |
| VIT_15s0048g02000.t01 | Wine grape | nucleus | 43.04 | 12.58 |
| VIT_17s0053g00780.t01 | Wine grape | nucleus | 35.44 | 11.83 |
| VIT_16s0100g00670.t01 | Wine grape | nucleus | 37.55 | 11.37 |
| VIT_04s0079g00480.t01 | Wine grape | nucleus | 33.76 | 11.2 |
| VIT_09s0002g04340.t01 | Wine grape | nucleus | 34.18 | 10.8 |
| VIT_02s0012g02030.t01 | Wine grape | nucleus | 32.07 | 9.52 |
| KRH27078 | Soybean | extracellular, golgi, peroxisome | 7.59 | 5.45 |
| Os08t0187500-01 | Rice | nucleus | 5.91 | 4.29 |
| HORVU3Hr1G022160.1 | Barley | cytosol | 1.69 | 3.64 |
| VIT_13s0067g01580.t01 | Wine grape | nucleus | 0.0 | 0.0 |
| VIT_09s0018g02100.t01 | Wine grape | nucleus | 0.0 | 0.0 |
Protein Annotations
| ArrayExpress:VIT_19s0177g00240 | EMBL:FN595498 | EnsemblPlants:VIT_19s0177g00240.t01 | EnsemblPlantsGene:VIT_19s0177g00240 | EntrezGene:100241726 | EntrezGene:LOC100241726 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0008289 | PANTHER:PTHR24326 | PANTHER:PTHR24326:SF507 | ProteinID:CCB48807 |
| ProteinID:CCB48807.1 | RefSeq:XP_002278971 | RefSeq:XP_002278971.2 | SEG:seg | SUPFAM:SSF55961 | UniParc:UPI000210A3B9 |
| UniProt:F6H9B4 | wikigene:100241726 | wikigene:LOC100241726 | MapMan:15.5.3.3 | : | : |
Description
No Description!
Coordinates
chr19:+:6077196..6085291
Molecular Weight (calculated)
25805.7 Da
IEP (calculated)
4.919
GRAVY (calculated)
-0.079
Length
237 amino acids
Sequence
(BLAST)
(BLAST)
001: MVSPGRENVL CLAERMMRKF WANLSDSSEN TWRPVPLKGA ENVRAMIRSG EDEEGRPPGT AIVIATSVWV PASPRRVFDF LHDVHTRNRW DILTCGHVVK
101: ETGHIDNGCD HGNRVSILEV KSPEDQIVVI LLQESYTTFT SSYVTFAPVE ACTLDMILNG GSPDHVPILP SGFSILPDGP TRDGGSGSLV TMAFQILDNS
201: SSATYIPPES VATIFKLVTE TAECIKAAMF SPSNLGT
101: ETGHIDNGCD HGNRVSILEV KSPEDQIVVI LLQESYTTFT SSYVTFAPVE ACTLDMILNG GSPDHVPILP SGFSILPDGP TRDGGSGSLV TMAFQILDNS
201: SSATYIPPES VATIFKLVTE TAECIKAAMF SPSNLGT
001: MFEPNMLLAA MNNADSNNHN YNHEDNNNEG FLRDDEFDSP NTKSGSENQE GGSGNDQDPL HPNKKKRYHR HTQLQIQEME AFFKECPHPD DKQRKQLSRE
101: LNLEPLQVKF WFQNKRTQMK NHHERHENSH LRAENEKLRN DNLRYREALA NASCPNCGGP TAIGEMSFDE HQLRLENARL REEIDRISAI AAKYVGKPVS
201: NYPLMSPPPL PPRPLELAMG NIGGEAYGNN PNDLLKSITA PTESDKPVII DLSVAAMEEL MRMVQVDEPL WKSLVLDEEE YARTFPRGIG PRPAGYRSEA
301: SRESAVVIMN HVNIVEILMD VNQWSTIFAG MVSRAMTLAV LSTGVAGNYN GALQVMSAEF QVPSPLVPTR ETYFARYCKQ QGDGSWAVVD ISLDSLQPNP
401: PARCRRRASG CLIQELPNGY SKVTWVEHVE VDDRGVHNLY KHMVSTGHAF GAKRWVAILD RQCERLASVM ATNISSGEVG VITNQEGRRS MLKLAERMVI
501: SFCAGVSAST AHTWTTLSGT GAEDVRVMTR KSVDDPGRPP GIVLSAATSF WIPVPPKRVF DFLRDENSRN EWDILSNGGV VQEMAHIANG RDTGNCVSLL
601: RVNSANSSQS NMLILQESCT DPTASFVIYA PVDIVAMNIV LNGGDPDYVA LLPSGFAILP DGNANSGAPG GDGGSLLTVA FQILVDSVPT AKLSLGSVAT
701: VNNLIACTVE RIKASMSCET A
101: LNLEPLQVKF WFQNKRTQMK NHHERHENSH LRAENEKLRN DNLRYREALA NASCPNCGGP TAIGEMSFDE HQLRLENARL REEIDRISAI AAKYVGKPVS
201: NYPLMSPPPL PPRPLELAMG NIGGEAYGNN PNDLLKSITA PTESDKPVII DLSVAAMEEL MRMVQVDEPL WKSLVLDEEE YARTFPRGIG PRPAGYRSEA
301: SRESAVVIMN HVNIVEILMD VNQWSTIFAG MVSRAMTLAV LSTGVAGNYN GALQVMSAEF QVPSPLVPTR ETYFARYCKQ QGDGSWAVVD ISLDSLQPNP
401: PARCRRRASG CLIQELPNGY SKVTWVEHVE VDDRGVHNLY KHMVSTGHAF GAKRWVAILD RQCERLASVM ATNISSGEVG VITNQEGRRS MLKLAERMVI
501: SFCAGVSAST AHTWTTLSGT GAEDVRVMTR KSVDDPGRPP GIVLSAATSF WIPVPPKRVF DFLRDENSRN EWDILSNGGV VQEMAHIANG RDTGNCVSLL
601: RVNSANSSQS NMLILQESCT DPTASFVIYA PVDIVAMNIV LNGGDPDYVA LLPSGFAILP DGNANSGAPG GDGGSLLTVA FQILVDSVPT AKLSLGSVAT
701: VNNLIACTVE RIKASMSCET A
Arabidopsis Description
HDG2AT1G05230 protein [Source:UniProtKB/TrEMBL;Acc:B9DFH8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.