Factsheet for VIT_15s0048g02000.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_06s0004g02230.t01
VIT_14s0066g00460.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G61150.1	VIT_06s0004g02230.t01	AT1G51355.1	21798944
AT3G61150.1	VIT_14s0066g00460.t01	AT3G27580.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g091630.2.1	Tomato	nucleus	87.42	86.36
PGSC0003DMT400071377	Potato	nucleus	87.05	85.99
Os09t0526300-00	Rice	nucleus	13.81	85.5
KRH40539	Soybean	nucleus	84.59	83.66
KRH48236	Soybean	nucleus	84.96	83.11
KRH00641	Soybean	nucleus	84.22	83.09
KRH65144	Soybean	nucleus	84.34	81.82
PGSC0003DMT400019986	Potato	nucleus	76.45	76.64
CDX74347	Canola	nucleus	70.41	72.0
AT4G00730.1	Thale cress	nucleus	71.15	71.95
CDX91894	Canola	nucleus	70.41	71.91
CDY18903	Canola	nucleus	62.15	71.49
CDY51143	Canola	nucleus	69.54	71.39
Bra037355.1-P	Field mustard	nucleus	69.54	71.39
CDX74762	Canola	nucleus	62.27	71.33
CDY07201	Canola	nucleus	69.3	71.32
GSMUA_Achr1P18760_001	Banana	nucleus	66.21	71.03
CDX67855	Canola	nucleus	66.83	69.49
CDY45684	Canola	nucleus	66.95	69.26
Bra003439.1-P	Field mustard	nucleus	66.83	69.04
AT3G61150.1	Thale cress	nucleus	67.45	67.7
Bra004934.1-P	Field mustard	nucleus	65.23	67.3
Os02t0674800-01	Rice	nucleus	65.23	65.8
Zm00001d040090_P002	Maize	nucleus	64.0	64.63
HORVU6Hr1G065300.3	Barley	nucleus	63.75	64.62
GSMUA_Achr3P12410_001	Banana	nucleus	58.82	64.29
TraesCS6A01G255800.1	Wheat	nucleus	63.63	64.18
EES02604	Sorghum	nucleus	64.49	64.17
TraesCS6B01G269700.1	Wheat	nucleus	63.5	64.05
TraesCS6D01G237000.1	Wheat	nucleus	63.38	63.93
VIT_16s0100g00670.t01	Wine grape	nucleus	61.16	63.35
HORVU0Hr1G013510.1	Barley	cytosol	10.73	62.59
Os04t0569100-01	Rice	nucleus	61.04	61.41
Zm00001d040091_P001	Maize	nucleus	19.24	59.77
EER99222	Sorghum	nucleus	64.24	59.75
HORVU5Hr1G080700.2	Barley	nucleus	61.9	58.85
VIT_10s0116g00680.t01	Wine grape	nucleus	52.53	58.68
TraesCS5B01G315100.2	Wheat	nucleus	61.41	58.59
TraesCS5D01G320600.1	Wheat	nucleus	61.28	58.54
TraesCS5A01G314400.2	Wheat	nucleus	61.16	58.42
KXG26935	Sorghum	nucleus	57.09	57.73
Zm00001d021236_P004	Maize	nucleus	63.87	57.36
VIT_12s0059g02310.t01	Wine grape	nucleus	53.39	57.2
TraesCS2D01G398600.1	Wheat	nucleus	51.54	53.32
TraesCS2B01G419200.1	Wheat	nucleus	51.29	52.99
VIT_17s0053g00780.t01	Wine grape	nucleus	45.87	52.39
TraesCS2A01G401200.3	Wheat	nucleus	51.54	52.25
Zm00001d026088_P002	Maize	nucleus	53.64	52.16
VIT_09s0018g02100.t01	Wine grape	nucleus	4.93	51.95
HORVU2Hr1G095210.1	Barley	nucleus	49.94	51.92
VIT_09s0002g04340.t01	Wine grape	nucleus	45.38	49.07
HORVU7Hr1G036950.2	Barley	cytosol	10.11	44.81
VIT_02s0012g02030.t01	Wine grape	nucleus	43.53	44.24
HORVU4Hr1G062510.2	Barley	cytosol	15.04	44.04
VIT_04s0079g00480.t01	Wine grape	nucleus	38.47	43.7
VIT_19s0177g00240.t01	Wine grape	cytosol, mitochondrion	12.58	43.04
VIT_13s0067g01580.t01	Wine grape	nucleus	5.92	42.86
HORVU3Hr1G108430.1	Barley	cytosol	16.03	39.04

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100260889	wikigene:100260889	MapMan:15.5.3.3	EMBL:AM459307	ProteinID:CAN61351
ProteinID:CAN61351.1	ProteinID:CCB61333	ProteinID:CCB61333.1	ncoils:Coil	UniProt:F6I316	EMBL:FN596739
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0008289	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS
InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:IPR002913	EntrezGene:LOC100260889	wikigene:LOC100260889	PFAM:PF00046
PFAM:PF01852	ScanProsite:PS00027	PFscan:PS50071	PFscan:PS50848	PANTHER:PTHR24326	PANTHER:PTHR24326:SF487
SMART:SM00234	SMART:SM00389	SUPFAM:SSF46689	SUPFAM:SSF55961	InterPro:START_lipid-bd_dom	TIGR:TC68000
UniParc:UPI00021088C8	ArrayExpress:VIT_15s0048g02000	EnsemblPlantsGene:VIT_15s0048g02000	EnsemblPlants:VIT_15s0048g02000.t01	unigene:Vvi.11959	RefSeq:XP_002272264
RefSeq:XP_002272264.2	RefSeq:XP_010661561.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr15:+:16133315..16138857

Molecular Weight (calculated)

87908.1 Da

IEP (calculated)

6.153

GRAVY (calculated)

-0.213

Length

811 amino acids

Sequence
(BLAST)

001: MSFGGFLDNS SGGGGARIVA DIPYSNNMAT GAIAQPRLVS PSLAKSMFSS PGLSLALQTS MEGQGEVTRL AENFESGGGR RSREDEHESR SGSDNMDGAS
101: GDDQDAADNP PRKKRYHRHT PQQIQELEAL FKECPHPDEK QRLELSRRLS LETRQVKFWF QNRRTQMKTQ LERHENSILR QENDKLRAEN MSIRDAMRNP
201: ICTNCGGPAI IGDISLEEQH LRIENARLKD ELDRVCALAG KFLGRPISSL ASSMAPAMPS SSLELGVGSN GFGGLSTVAT TLPLGHDFGG GISSTLPVAP
301: PTSTTGVTGL ERSLERSMFL ELALAAMDEL VKMAQTDEPL WVRSLEGGRE ILNLEEYMRT FTPCIGMKPS GFVTESTRET GMVIINSLAL VETLMDSNRW
401: AEMFPCMIAR TSTTDVISSG MGGTRNGALQ LMHAELQVLS PLVPVREVNF LRFCKQHAEG VWAVVDVSID TIRETSVAPT FVNCRRLPSG CVVQDMPNGY
501: SKVTWVEHAE YDESAVHQLY RPLLGSGMGF GAQRWVATLQ RQCECLAILM SSTVPTRDHT AAITAGGRRS MLKLAQRMTD NFCAGVCAST VHKWNKLCAG
601: NVDEDVRVMT RKSVDDPGEP PGIVLSAATS VWLPVSPQRL FDFLRDERLR SEWDILSNGG PMQEMAHIAK GQDHGNCVSL LRASAMNANQ SSMLILQETC
701: IDAAGSLVVY APVDIPAMHV VMNGGDSAYV ALLPSGFAIV PDGPGSRGPN SGVHTNSGGP NRVSGSLLTV AFQILVNSLP TAKLTVESVE TVNNLISCTV
801: QKIKAALHCE S

Best Arabidopsis Sequence Match ( AT4G00730.1 )
(BLAST)

001: MNFGSLFDNT PGGGSTGARL LSGLSYGNHT AATNVLPGGA MAQAAAAASL FSPPLTKSVY ASSGLSLALE QPERGTNRGE ASMRNNNNVG GGGDTFDGSV
101: NRRSREEEHE SRSGSDNVEG ISGEDQDAAD KPPRKKRYHR HTPQQIQELE SMFKECPHPD EKQRLELSKR LCLETRQVKF WFQNRRTQMK TQLERHENAL
201: LRQENDKLRA ENMSIREAMR NPICTNCGGP AMLGDVSLEE HHLRIENARL KDELDRVCNL TGKFLGHHHN HHYNSSLELA VGTNNNGGHF AFPPDFGGGG
301: GCLPPQQQQS TVINGIDQKS VLLELALTAM DELVKLAQSE EPLWVKSLDG ERDELNQDEY MRTFSSTKPT GLATEASRTS GMVIINSLAL VETLMDSNRW
401: TEMFPCNVAR ATTTDVISGG MAGTINGALQ LMNAELQVLS PLVPVRNVNF LRFCKQHAEG VWAVVDVSID PVRENSGGAP VIRRLPSGCV VQDVSNGYSK
501: VTWVEHAEYD ENQIHQLYRP LLRSGLGFGS QRWLATLQRQ CECLAILISS SVTSHDNTSI TPGGRKSMLK LAQRMTFNFC SGISAPSVHN WSKLTVGNVD
601: PDVRVMTRKS VDDPGEPPGI VLSAATSVWL PAAPQRLYDF LRNERMRCEW DILSNGGPMQ EMAHITKGQD QGVSLLRSNA MNANQSSMLI LQETCIDASG
701: ALVVYAPVDI PAMHVVMNGG DSSYVALLPS GFAVLPDGGI DGGGSGDGDQ RPVGGGSLLT VAFQILVNNL PTAKLTVESV ETVNNLISCT VQKIRAALQC
801: ES

Arabidopsis Description

ANL2Homeobox-leucine zipper protein ANTHOCYANINLESS 2 [Source:UniProtKB/Swiss-Prot;Acc:Q0WV12]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.