Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX67855 | Canola | nucleus | 87.25 | 90.38 |
| Bra003439.1-P | Field mustard | nucleus | 87.13 | 89.68 |
| CDY45684 | Canola | nucleus | 86.88 | 89.54 |
| Os09t0526300-00 | Rice | nucleus | 13.86 | 85.5 |
| VIT_15s0048g02000.t01 | Wine grape | nucleus | 67.7 | 67.45 |
| PGSC0003DMT400071377 | Potato | nucleus | 67.08 | 66.02 |
| Solyc01g091630.2.1 | Tomato | nucleus | 66.96 | 65.9 |
| KRH48236 | Soybean | nucleus | 67.2 | 65.5 |
| KRH00641 | Soybean | nucleus | 66.21 | 65.09 |
| KRH40539 | Soybean | nucleus | 65.84 | 64.88 |
| KRH65144 | Soybean | nucleus | 66.71 | 64.47 |
| GSMUA_Achr1P18760_001 | Banana | nucleus | 60.02 | 64.15 |
| AT4G00730.1 | Thale cress | nucleus | 62.38 | 62.84 |
| PGSC0003DMT400019986 | Potato | nucleus | 61.39 | 61.31 |
| Os02t0674800-01 | Rice | nucleus | 58.66 | 58.96 |
| Zm00001d040090_P002 | Maize | nucleus | 58.54 | 58.9 |
| HORVU6Hr1G065300.3 | Barley | nucleus | 58.29 | 58.88 |
| TraesCS6D01G237000.1 | Wheat | nucleus | 58.54 | 58.83 |
| GSMUA_Achr3P12410_001 | Banana | nucleus | 53.96 | 58.76 |
| TraesCS6A01G255800.1 | Wheat | nucleus | 58.42 | 58.71 |
| TraesCS6B01G269700.1 | Wheat | nucleus | 58.29 | 58.58 |
| EES02604 | Sorghum | nucleus | 59.03 | 58.53 |
| HORVU0Hr1G013510.1 | Barley | cytosol | 10.02 | 58.27 |
| Os04t0569100-01 | Rice | nucleus | 55.2 | 55.34 |
| Zm00001d040091_P001 | Maize | nucleus | 17.2 | 53.26 |
| EER99222 | Sorghum | nucleus | 57.3 | 53.1 |
| AT5G52170.2 | Thale cress | nucleus | 44.93 | 52.84 |
| TraesCS5D01G320600.1 | Wheat | nucleus | 54.95 | 52.3 |
| TraesCS5A01G314400.2 | Wheat | nucleus | 54.83 | 52.18 |
| HORVU5Hr1G080700.2 | Barley | nucleus | 55.07 | 52.17 |
| TraesCS5B01G315100.2 | Wheat | nucleus | 54.83 | 52.12 |
| KXG26935 | Sorghum | nucleus | 51.49 | 51.87 |
| AT4G04890.1 | Thale cress | nucleus | 46.91 | 51.01 |
| AT4G21750.3 | Thale cress | nucleus | 47.52 | 50.39 |
| AT1G05230.5 | Thale cress | nucleus | 44.68 | 50.07 |
| Zm00001d021236_P004 | Maize | nucleus | 55.94 | 50.06 |
| TraesCS2D01G398600.1 | Wheat | nucleus | 47.65 | 49.11 |
| TraesCS2B01G419200.1 | Wheat | nucleus | 47.4 | 48.79 |
| Zm00001d026088_P002 | Maize | nucleus | 49.88 | 48.32 |
| HORVU2Hr1G095210.1 | Barley | nucleus | 46.16 | 47.82 |
| TraesCS2A01G401200.3 | Wheat | nucleus | 47.15 | 47.62 |
| AT1G17920.1 | Thale cress | nucleus | 37.99 | 44.69 |
| AT1G73360.1 | Thale cress | nucleus | 38.61 | 43.21 |
| HORVU4Hr1G062510.2 | Barley | cytosol | 14.11 | 41.16 |
| AT2G32370.1 | Thale cress | nucleus | 36.39 | 40.55 |
| HORVU7Hr1G036950.2 | Barley | cytosol | 9.03 | 39.89 |
| AT4G25530.1 | Thale cress | nucleus | 33.17 | 39.07 |
| AT1G79840.2 | Thale cress | nucleus, plastid | 36.14 | 37.63 |
| AT4G17710.1 | Thale cress | nucleus | 31.56 | 35.97 |
| AT5G46880.3 | Thale cress | nucleus | 36.01 | 35.23 |
| AT3G03260.1 | Thale cress | nucleus | 29.95 | 34.62 |
| AT5G17320.1 | Thale cress | nucleus | 29.58 | 33.29 |
| HORVU3Hr1G108430.1 | Barley | cytosol | 13.49 | 32.73 |
| AT1G34650.1 | Thale cress | nucleus | 27.6 | 31.5 |
| AT5G07260.1 | Thale cress | cytosol | 19.8 | 29.57 |
| AT4G26920.1 | Thale cress | cytosol, plasma membrane, plastid | 14.11 | 24.73 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.3 | EntrezGene:825287 | UniProt:A0A178V5Q4 | ProteinID:AEE80161.1 | ArrayExpress:AT3G61150 |
| EnsemblPlantsGene:AT3G61150 | RefSeq:AT3G61150 | TAIR:AT3G61150 | RefSeq:AT3G61150-TAIR-G | EnsemblPlants:AT3G61150.1 | TAIR:AT3G61150.1 |
| EMBL:AY050866 | EMBL:AY096757 | Unigene:At.21209 | ProteinID:CAB45018.1 | ProteinID:CAB71045.1 | ncoils:Coil |
| GO:GO:0000003 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008289 | GO:GO:0009058 |
| GO:GO:0009791 | GO:GO:0009908 | GO:GO:0009987 | GO:GO:0030154 | GO:GO:0043565 | GO:GO:0048497 |
| Symbol:HDG1 | InterPro:Homeobox-like_sf | InterPro:Homeobox_CS | InterPro:Homeobox_dom | InterPro:IPR001356 | InterPro:IPR002913 |
| RefSeq:NP_191674.1 | ProteinID:OAP01529.1 | PFAM:PF00046 | PFAM:PF01852 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000282 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007131 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009001 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009052 | PO:PO:0009067 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020094 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | ScanProsite:PS00027 | PFscan:PS50071 |
| PFscan:PS50848 | PANTHER:PTHR24326 | PANTHER:PTHR24326:SF487 | UniProt:Q9M2E8 | SMART:SM00234 | SMART:SM00389 |
| SUPFAM:SSF46689 | SUPFAM:SSF55961 | InterPro:START_lipid-bd_dom | UniParc:UPI000009FFD8 | SEG:seg | : |
Description
HDG1HDG1 [Source:UniProtKB/TrEMBL;Acc:A0A178V5Q4]
Coordinates
chr3:+:22630331..22635155
Molecular Weight (calculated)
88171.8 Da
IEP (calculated)
6.686
GRAVY (calculated)
-0.316
Length
808 amino acids
Sequence
(BLAST)
(BLAST)
001: MNFNGFLDDG AGASKLLSDA PYNNHFSFSA VDTMLGSAAI APSQSLPFSS SGLSLGLQTN GEMSRNGEIM ESNVSRKSSR GEDVESRSES DNAEAVSGDD
101: LDTSDRPLKK KKRYHRHTPK QIQDLESVFK ECAHPDEKQR LDLSRRLNLD PRQVKFWFQN RRTQMKTQIE RHENALLRQE NDKLRAENMS VREAMRNPMC
201: GNCGGPAVIG EISMEEQHLR IENSRLKDEL DRVCALTGKF LGRSNGSHHI PDSALVLGVG VGSGGCNVGG GFTLSSPLLP QASPRFEISN GTGSGLVATV
301: NRQQPVSVSD FDQRSRYLDL ALAAMDELVK MAQTREPLWV RSSDSGFEVL NQEEYDTSFS RCVGPKQDGF VSEASKEAGT VIINSLALVE TLMDSERWAE
401: MFPSMVSRTS TTEIISSGMG GRNGALHLMH AELQLLSPLV PVRQVSFLRF CKQHAEGVWA VVDVSIDSIR EGSSSSCRRL PSGCLVQDMA NGYSKVTWIE
501: HTEYDENHIH RLYRPLLRCG LAFGAHRWMA ALQRQCECLT ILMSSTVSTS TNPSPINCNG RKSMLKLAKR MTDNFCGGVC ASSLQKWSKL NVGNVDEDVR
601: IMTRKSVNNP GEPPGIILNA ATSVWMPVSP RRLFDFLGNE RLRSEWDILS NGGPMKEMAH IAKGHDRSNS VSLLRASAIN ANQSSMLILQ ETSIDAAGAV
701: VVYAPVDIPA MQAVMNGGDS AYVALLPSGF AILPNGQAGT QRCAAEERNS IGNGGCMEEG GSLLTVAFQI LVNSLPTAKL TVESVETVNN LISCTVQKIK
801: AALHCDST
101: LDTSDRPLKK KKRYHRHTPK QIQDLESVFK ECAHPDEKQR LDLSRRLNLD PRQVKFWFQN RRTQMKTQIE RHENALLRQE NDKLRAENMS VREAMRNPMC
201: GNCGGPAVIG EISMEEQHLR IENSRLKDEL DRVCALTGKF LGRSNGSHHI PDSALVLGVG VGSGGCNVGG GFTLSSPLLP QASPRFEISN GTGSGLVATV
301: NRQQPVSVSD FDQRSRYLDL ALAAMDELVK MAQTREPLWV RSSDSGFEVL NQEEYDTSFS RCVGPKQDGF VSEASKEAGT VIINSLALVE TLMDSERWAE
401: MFPSMVSRTS TTEIISSGMG GRNGALHLMH AELQLLSPLV PVRQVSFLRF CKQHAEGVWA VVDVSIDSIR EGSSSSCRRL PSGCLVQDMA NGYSKVTWIE
501: HTEYDENHIH RLYRPLLRCG LAFGAHRWMA ALQRQCECLT ILMSSTVSTS TNPSPINCNG RKSMLKLAKR MTDNFCGGVC ASSLQKWSKL NVGNVDEDVR
601: IMTRKSVNNP GEPPGIILNA ATSVWMPVSP RRLFDFLGNE RLRSEWDILS NGGPMKEMAH IAKGHDRSNS VSLLRASAIN ANQSSMLILQ ETSIDAAGAV
701: VVYAPVDIPA MQAVMNGGDS AYVALLPSGF AILPNGQAGT QRCAAEERNS IGNGGCMEEG GSLLTVAFQI LVNSLPTAKL TVESVETVNN LISCTVQKIK
801: AALHCDST
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.