Factsheet for AT1G79840.2

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 5
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra003535.1-P	Field mustard	nucleus	88.66	91.73
CDX79408	Canola	nucleus	90.21	89.74
CDX67929	Canola	nucleus	89.82	89.02
KRH09884	Soybean	plastid	63.92	66.05
VIT_09s0002g04340.t01	Wine grape	nucleus	63.4	65.6
KRH23432	Soybean	plastid	63.79	64.96
KRH47277	Soybean	nucleus	62.24	64.31
KRH44348	Soybean	nucleus	61.08	63.37
Solyc03g120620.2.1	Tomato	nucleus	60.95	61.03
PGSC0003DMT400006770	Potato	nucleus	60.44	60.75
Os01t0760800-00	Rice	nucleus	10.31	59.7
GSMUA_Achr3P15400_001	Banana	nucleus	56.83	58.88
GSMUA_Achr8P27340_001	Banana	nucleus	55.41	57.41
HORVU0Hr1G006920.1	Barley	nucleus	7.09	55.56
HORVU3Hr1G073290.1	Barley	nucleus	42.91	50.76
TraesCS3B01G331200.1	Wheat	nucleus	49.23	50.6
TraesCS3A01G305300.1	Wheat	nucleus	48.71	49.67
TraesCS3D01G296500.3	Wheat	nucleus	45.62	44.58
OQU87592	Sorghum	nucleus	40.21	43.88
AT1G05230.5	Thale cress	nucleus	37.37	40.22
AT4G21750.3	Thale cress	nucleus	38.92	39.63
AT4G04890.1	Thale cress	nucleus	37.89	39.57
AT5G52170.2	Thale cress	nucleus	32.99	37.26
AT4G00730.1	Thale cress	nucleus	38.27	37.03
AT1G73360.1	Thale cress	nucleus	34.28	36.84
AT3G61150.1	Thale cress	nucleus	37.63	36.14
AT1G17920.1	Thale cress	nucleus	31.7	35.81
AT2G32370.1	Thale cress	nucleus	31.44	33.66
AT4G17710.1	Thale cress	nucleus	29.64	32.44
AT3G03260.1	Thale cress	nucleus	28.61	31.76
AT5G46880.3	Thale cress	nucleus	33.51	31.48
AT4G25530.1	Thale cress	nucleus	27.71	31.34
AT1G34650.1	Thale cress	nucleus	27.45	30.08
AT5G17320.1	Thale cress	nucleus	27.84	30.08
AT5G07260.1	Thale cress	cytosol	16.37	23.48
AT4G26920.1	Thale cress	cytosol, plasma membrane, plastid	12.37	20.82

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.3	Gene3D:3.30.530.20	EntrezGene:844323	ProteinID:AEE36312.1	ArrayExpress:AT1G79840
EnsemblPlantsGene:AT1G79840	RefSeq:AT1G79840	TAIR:AT1G79840	RefSeq:AT1G79840-TAIR-G	EnsemblPlants:AT1G79840.2	TAIR:AT1G79840.2
Unigene:At.19986	ncoils:Coil	UniProt:F4HQC0	Symbol:GL2	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0008289	GO:GO:0009058	GO:GO:0009653	GO:GO:0009957	GO:GO:0009987	GO:GO:0010062
GO:GO:0030154	GO:GO:0043565	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS	InterPro:Homeobox_dom	InterPro:IPR001356
InterPro:IPR002913	InterPro:IPR023393	RefSeq:NP_001185443.1	PFAM:PF00046	PFAM:PF01852	PO:PO:0000026
PO:PO:0000037	PO:PO:0000115	PO:PO:0000263	PO:PO:0001078	PO:PO:0001081	PO:PO:0001170
PO:PO:0003015	PO:PO:0004507	PO:PO:0006036	PO:PO:0006504	PO:PO:0007611	PO:PO:0009005
PO:PO:0009006	PO:PO:0009009	PO:PO:0009010	PO:PO:0009025	PO:PO:0009046	PO:PO:0020023
PO:PO:0020038	PO:PO:0025257	ScanProsite:PS00027	PFscan:PS50071	PFscan:PS50848	PANTHER:PTHR24326
PANTHER:PTHR24326:SF482	SMART:SM00234	SMART:SM00389	SUPFAM:SSF46689	SUPFAM:SSF55961	InterPro:START-like_dom_sf
InterPro:START_lipid-bd_dom	UniParc:UPI0001E92BBD	SEG:seg	:	:	:

Description

GL2HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4HQC0]

Coordinates

chr1:+:30036956..30041440

Molecular Weight (calculated)

86541.4 Da

IEP (calculated)

6.818

GRAVY (calculated)

-0.495

Length

776 amino acids

Sequence
(BLAST)

001: MKSIDGCQCC SWPCFKLLNS KKLARDRICM SMAVDMSSKQ PTKDFFSSPA LSLSLAGIFR NASSGSTNPE EDFLGRRVVD DEDRTVEMSS ENSGPTRSRS
101: EEDLEGEDHD DEEEEEEDGA AGNKGTNKRK RKKYHRHTTD QIRHMEALFK ETPHPDEKQR QQLSKQLGLA PRQVKFWFQN RRTQIKAIQE RHENSLLKAE
201: LEKLREENKA MRESFSKANS SCPNCGGGPD DLHLENSKLK AELDKLRAAL GRTPYPLQAS CSDDQEHRLG SLDFYTGVFA LEKSRIAEIS NRATLELQKM
301: ATSGEPMWLR SVETGREILN YDEYLKEFPQ AQASSFPGRK TIEASRDAGI VFMDAHKLAQ SFMDVGQWKE TFACLISKAA TVDVIRQGEG PSRIDGAIQL
401: MFGEMQLLTP VVPTREVYFV RSCRQLSPEK WAIVDVSVSV EDSNTEKEAS LLKCRKLPSG CIIEDTSNGH SKVTWVEHLD VSASTVQPLF RSLVNTGLAF
501: GARHWVATLQ LHCERLVFFM ATNVPTKDSL GVTTLAGRKS VLKMAQRMTQ SFYRAIAASS YHQWTKITTK TGQDMRVSSR KNLHDPGEPT GVIVCASSSL
601: WLPVSPALLF DFFRDEARRH EWDALSNGAH VQSIANLSKG QDRGNSVAIQ TVKSREKSIW VLQDSSTNSY ESVVVYAPVD INTTQLVLAG HDPSNIQILP
701: SGFSIIPDGV ESRPLVITST QDDRNSQGGS LLTLALQTLI NPSPAAKLNM ESVESVTNLV SVTLHNIKRS LQIEDC

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.