Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX76559 | Canola | nucleus | 68.27 | 65.94 |
| CDY08866 | Canola | nucleus | 68.41 | 65.9 |
| Bra021035.1-P | Field mustard | nucleus | 67.84 | 65.53 |
| AT5G46880.3 | Thale cress | nucleus | 62.48 | 53.63 |
| KRH74360 | Soybean | nucleus | 53.46 | 48.04 |
| PGSC0003DMT400006155 | Potato | nucleus | 51.2 | 47.51 |
| VIT_02s0012g02030.t01 | Wine grape | nucleus | 53.31 | 47.37 |
| KRH39579 | Soybean | nucleus | 53.03 | 47.0 |
| Solyc08g076370.2.1 | Tomato | nucleus | 53.6 | 45.13 |
| GSMUA_Achr5P14100_001 | Banana | nucleus | 47.81 | 44.84 |
| GSMUA_Achr4P19010_001 | Banana | nucleus | 49.65 | 43.95 |
| TraesCS1A01G193400.1 | Wheat | nucleus, plastid | 50.07 | 40.66 |
| Os10t0575600-01 | Rice | nucleus | 49.79 | 40.02 |
| TraesCS1D01G197300.1 | Wheat | nucleus | 49.79 | 39.98 |
| HORVU1Hr1G050620.2 | Barley | nucleus | 49.79 | 39.89 |
| TraesCS1B01G208400.1 | Wheat | nucleus | 49.65 | 39.55 |
| KXG38837 | Sorghum | nucleus | 48.94 | 39.34 |
| Zm00001d030069_P004 | Maize | nucleus | 48.1 | 38.57 |
| AT1G05230.5 | Thale cress | nucleus | 38.5 | 37.86 |
| AT4G04890.1 | Thale cress | nucleus | 39.35 | 37.55 |
| AT1G73360.1 | Thale cress | nucleus | 38.22 | 37.53 |
| AT1G17920.1 | Thale cress | nucleus | 36.25 | 37.41 |
| AT4G21750.3 | Thale cress | nucleus | 39.21 | 36.48 |
| AT4G00730.1 | Thale cress | nucleus | 37.09 | 32.79 |
| AT5G52170.2 | Thale cress | nucleus | 31.31 | 32.31 |
| AT3G61150.1 | Thale cress | nucleus | 35.97 | 31.56 |
| AT2G32370.1 | Thale cress | nucleus | 32.02 | 31.31 |
| AT3G03260.1 | Thale cress | nucleus | 29.76 | 30.19 |
| AT1G79840.2 | Thale cress | nucleus, plastid | 32.44 | 29.64 |
| AT4G25530.1 | Thale cress | nucleus | 28.07 | 29.01 |
| AT5G17320.1 | Thale cress | nucleus | 26.09 | 25.77 |
| AT1G34650.1 | Thale cress | nucleus | 24.54 | 24.58 |
| AT5G07260.1 | Thale cress | cytosol | 17.77 | 23.29 |
| AT4G26920.1 | Thale cress | cytosol, plasma membrane, plastid | 12.98 | 19.96 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.3 | EntrezGene:827492 | ProteinID:AEE83937.1 | ArrayExpress:AT4G17710 | EnsemblPlantsGene:AT4G17710 |
| RefSeq:AT4G17710 | TAIR:AT4G17710 | RefSeq:AT4G17710-TAIR-G | EnsemblPlants:AT4G17710.1 | TAIR:AT4G17710.1 | EMBL:AY133700 |
| Unigene:At.32974 | ProteinID:CAB10551.1 | ProteinID:CAB78774.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0008289 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 | Symbol:HDG4 |
| InterPro:Homeobox-like_sf | InterPro:Homeobox_CS | InterPro:Homeobox_dom | InterPro:IPR001356 | InterPro:IPR002913 | RefSeq:NP_193506.2 |
| PFAM:PF00046 | PFAM:PF01852 | PO:PO:0009046 | ScanProsite:PS00027 | PFscan:PS50071 | PFscan:PS50848 |
| PANTHER:PTHR24326 | PANTHER:PTHR24326:SF267 | UniProt:Q8L7H4 | SMART:SM00234 | SMART:SM00389 | SUPFAM:SSF46689 |
| SUPFAM:SSF55961 | InterPro:START_lipid-bd_dom | UniParc:UPI000009FE99 | SEG:seg | : | : |
Description
HDG4Homeobox-leucine zipper protein HDG4 [Source:UniProtKB/Swiss-Prot;Acc:Q8L7H4]
Coordinates
chr4:-:9856255..9859288
Molecular Weight (calculated)
79281.7 Da
IEP (calculated)
6.625
GRAVY (calculated)
-0.346
Length
709 amino acids
Sequence
(BLAST)
(BLAST)
001: METKDKKEKG HMVLNSDNVF GSVSSSPTTT IQNPNYFTSF ENPNFPYIFP KEEYEVMSKI ESGSGKSTGS GHDPVENTAI EQEPPAAKKK RYHRHTASQI
101: QQMEALFKEN AHPDTKTRLR LSKKLGLSPI QVKFWFQNKR TQIKAQQSRS DNAKLKAENE TLKTESQNIQ SNFQCLFCST CGHNLRLENA RLRQELDRLR
201: SIVSMRNPSP SQEITPETNK NNNDNMLIAE EEKAIDMELA VSCARELAKM CDINEPLWNK KRLDNESVCL NEEEYKKMFL WPLMNDDDRF RREASRANAV
301: IMLNCITLVK AFLDADKWSE MFFPIVSSAK TAQIISSGAS GPSGTLLLMF AELQVVSPLV PTREAYFLRY VEQNAEEGKW MVVDFPIDRI KPASATTTDQ
401: YRRKPSGCII QAMRNGYSQV TWVEHVEVEE KHVQDEVVRE FVESGVAFGA ERWLSVLKRQ CERMASLMAT NITDLGVIPS VEARKNLMKL SQRMVKTFCL
501: NIINSHGQAP TKDTVKIVSR KVCGGLVPCA VSVTLLPYSH QQVFDLLRDN QRLSQLEILF MGSSFQEVAH IANGSHLGNS ISLLRINVES NSSHNVELML
601: QETCTDNSGS LLVYSTVDPV AVQLAMNGED PSEIPLLPVG FSVVPVNPSD GVEGSSVSSP SCLLTVAIQV LGSNVTTERL DLSTVSVINH RICATVNRIT
701: SALVNDVGN
101: QQMEALFKEN AHPDTKTRLR LSKKLGLSPI QVKFWFQNKR TQIKAQQSRS DNAKLKAENE TLKTESQNIQ SNFQCLFCST CGHNLRLENA RLRQELDRLR
201: SIVSMRNPSP SQEITPETNK NNNDNMLIAE EEKAIDMELA VSCARELAKM CDINEPLWNK KRLDNESVCL NEEEYKKMFL WPLMNDDDRF RREASRANAV
301: IMLNCITLVK AFLDADKWSE MFFPIVSSAK TAQIISSGAS GPSGTLLLMF AELQVVSPLV PTREAYFLRY VEQNAEEGKW MVVDFPIDRI KPASATTTDQ
401: YRRKPSGCII QAMRNGYSQV TWVEHVEVEE KHVQDEVVRE FVESGVAFGA ERWLSVLKRQ CERMASLMAT NITDLGVIPS VEARKNLMKL SQRMVKTFCL
501: NIINSHGQAP TKDTVKIVSR KVCGGLVPCA VSVTLLPYSH QQVFDLLRDN QRLSQLEILF MGSSFQEVAH IANGSHLGNS ISLLRINVES NSSHNVELML
601: QETCTDNSGS LLVYSTVDPV AVQLAMNGED PSEIPLLPVG FSVVPVNPSD GVEGSSVSSP SCLLTVAIQV LGSNVTTERL DLSTVSVINH RICATVNRIT
701: SALVNDVGN
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.