Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra021035.1-P | Field mustard | nucleus | 99.32 | 99.32 |
| CDY08866 | Canola | nucleus | 95.64 | 95.38 |
| AT4G17710.1 | Thale cress | nucleus | 65.94 | 68.27 |
| CDY43458 | Canola | nucleus | 59.13 | 53.45 |
| CDY33492 | Canola | nucleus | 57.49 | 53.02 |
| CDX77711 | Canola | nucleus | 59.26 | 52.86 |
| CDY03177 | Canola | nucleus | 59.26 | 52.66 |
| VIT_02s0012g02030.t01 | Wine grape | nucleus | 52.86 | 48.62 |
| KRH74360 | Soybean | nucleus | 51.36 | 47.78 |
| KRH39579 | Soybean | nucleus | 51.23 | 47.0 |
| PGSC0003DMT400006155 | Potato | nucleus | 48.09 | 46.2 |
| GSMUA_Achr5P14100_001 | Banana | nucleus | 46.32 | 44.97 |
| Solyc08g076370.2.1 | Tomato | nucleus | 51.36 | 44.77 |
| GSMUA_Achr4P19010_001 | Banana | nucleus | 47.14 | 43.2 |
| CDX96744 | Canola | nucleus | 37.06 | 40.42 |
| Os10t0575600-01 | Rice | nucleus | 47.68 | 39.68 |
| KXG38837 | Sorghum | nucleus | 47.41 | 39.46 |
| HORVU1Hr1G050620.2 | Barley | nucleus | 47.55 | 39.44 |
| CDX83884 | Canola | nucleus | 36.78 | 39.42 |
| TraesCS1D01G197300.1 | Wheat | nucleus | 47.28 | 39.3 |
| TraesCS1A01G193400.1 | Wheat | nucleus, plastid | 46.73 | 39.29 |
| CDY26204 | Canola | nucleus | 34.06 | 39.25 |
| CDY06167 | Canola | nucleus | 38.42 | 39.17 |
| CDX68229 | Canola | nucleus | 37.47 | 39.12 |
| Zm00001d030069_P004 | Maize | nucleus | 46.87 | 38.91 |
| CDY11109 | Canola | nucleus | 37.6 | 38.87 |
| CDX98703 | Canola | nucleus | 36.78 | 38.85 |
| TraesCS1B01G208400.1 | Wheat | nucleus | 47.0 | 38.76 |
| CDX94054 | Canola | nucleus | 36.65 | 38.7 |
| CDY27417 | Canola | nucleus | 37.6 | 38.66 |
| CDY19185 | Canola | nucleus | 35.83 | 38.56 |
| CDX90879 | Canola | nucleus | 37.6 | 38.55 |
| CDX76399 | Canola | nucleus | 37.47 | 38.46 |
| CDX96471 | Canola | nucleus | 37.6 | 38.44 |
| CDY21319 | Canola | nucleus | 37.47 | 38.41 |
| CDY26205 | Canola | nucleus | 36.1 | 38.41 |
| CDX72984 | Canola | nucleus | 37.33 | 38.32 |
| CDY42097 | Canola | nucleus | 26.98 | 38.3 |
| CDY66622 | Canola | nucleus | 37.87 | 38.03 |
| CDY23096 | Canola | nucleus | 6.81 | 37.88 |
| CDY10041 | Canola | nucleus | 38.42 | 37.75 |
| CDY71572 | Canola | nucleus | 20.03 | 37.4 |
| CDY16639 | Canola | nucleus | 37.33 | 37.38 |
| CDX94586 | Canola | nucleus | 37.06 | 37.16 |
| CDX79091 | Canola | nucleus | 37.74 | 37.13 |
| CDY49515 | Canola | plasma membrane | 38.28 | 34.65 |
| CDX74762 | Canola | nucleus | 32.97 | 34.18 |
| CDY18903 | Canola | nucleus | 32.56 | 33.9 |
| CDY46842 | Canola | nucleus | 38.28 | 33.86 |
| CDY00515 | Canola | nucleus | 30.25 | 32.99 |
| CDY07201 | Canola | nucleus | 35.29 | 32.87 |
| CDY31916 | Canola | nucleus | 30.11 | 32.84 |
| CDY51143 | Canola | nucleus | 35.29 | 32.78 |
| CDX91894 | Canola | nucleus | 35.29 | 32.62 |
| CDX74347 | Canola | nucleus | 35.01 | 32.41 |
| CDY48272 | Canola | nucleus | 31.06 | 32.39 |
| CDY12213 | Canola | nucleus | 31.34 | 32.3 |
| CDX67855 | Canola | nucleus | 33.92 | 31.92 |
| CDY45684 | Canola | nucleus | 33.92 | 31.76 |
| CDY19129 | Canola | nucleus | 31.06 | 31.36 |
| CDY15339 | Canola | nucleus | 31.2 | 31.33 |
| CDX67929 | Canola | nucleus | 32.29 | 30.27 |
| CDY39874 | Canola | plasma membrane | 7.9 | 30.21 |
| CDY30748 | Canola | endoplasmic reticulum | 24.11 | 30.15 |
| CDX79408 | Canola | nucleus | 32.02 | 30.13 |
| CDY62389 | Canola | cytosol | 19.89 | 29.86 |
| CDY42301 | Canola | nucleus | 27.79 | 29.57 |
| CDY44946 | Canola | nucleus | 26.02 | 29.48 |
| CDY67945 | Canola | nucleus | 27.66 | 29.46 |
| CDX85461 | Canola | cytosol | 28.07 | 29.22 |
| CDY43137 | Canola | nucleus | 27.11 | 28.88 |
| CDY53691 | Canola | nucleus | 27.52 | 28.45 |
| CDY02713 | Canola | nucleus | 28.07 | 27.88 |
| CDX89415 | Canola | cytosol, mitochondrion | 6.68 | 27.53 |
| CDY69499 | Canola | cytosol | 11.17 | 26.97 |
| CDY16938 | Canola | nucleus | 24.11 | 26.82 |
| CDY49937 | Canola | nucleus | 24.8 | 26.22 |
| CDX94443 | Canola | cytosol | 22.21 | 25.96 |
| CDY21211 | Canola | nucleus | 24.39 | 25.79 |
| CDX89416 | Canola | nucleus | 22.62 | 25.58 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.3 | GO:A0A078CKL6 | EnsemblPlants:CDX76559 | ProteinID:CDX76559 | ProteinID:CDX76559.1 |
| ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008289 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0043565 | EnsemblPlantsGene:GSBRNA2T00126997001 | InterPro:Homeobox-like_sf | InterPro:Homeobox_CS | InterPro:Homeobox_dom | InterPro:IPR001356 |
| InterPro:IPR002913 | PFAM:PF00046 | PFAM:PF01852 | ScanProsite:PS00027 | PFscan:PS50071 | PFscan:PS50848 |
| PANTHER:PTHR24326 | PANTHER:PTHR24326:SF267 | SMART:SM00234 | SMART:SM00389 | SUPFAM:SSF46689 | SUPFAM:SSF55961 |
| InterPro:START_lipid-bd_dom | UniParc:UPI0004EE06A6 | SEG:seg | : | : | : |
Description
BnaA08g08410D
Coordinates
chrLK031807:+:2069947..2073172
Molecular Weight (calculated)
82135.9 Da
IEP (calculated)
6.473
GRAVY (calculated)
-0.325
Length
734 amino acids
Sequence
(BLAST)
(BLAST)
001: MYEDHQVAKS GKEGGHMVTN YSDNIFGSAS SSPTGTVQNP DFKLSTFLNP NFSYVIPKEE YGMMSMTENG SAWSGNNPVE DSAIEQQLPP VKKKRLHRHS
101: THQIQEMEAF FKVNPHPNDD DKTRLSEELG LTPLQVKFWF QNRRNQIKIE QDRSDNKMLK AENETLKTEN RKLQFDLQRL SCSSCGGSRD KLHLENYRLR
201: QELDRLHSIA SLMNPCLPPP ETACLFPDMK DNITNNLLIA KEDKAVAMDL AVSCVQELAK MCATNEPLWN KKGSDNEIIS LNEDVYKKMF QWPSVDDNHF
301: RREASRANTV VIMNSITLVN AFLDADKWSE MFCSIVSRAK TIQIISSGVS GASGSLLLMY AELQVPSPLV PTREIYFLRY VKQNAEAGKW MIVDFPVDGL
401: IKPASGITTT DQYRRKPSGF IIQDMSNGYS QITWVEHVEV EEKHVHHEMV REYVESGAAF GAERWLAVLR RQCERMASLM ATNITDLGVI PSVEAKRKLM
501: KLSESMVRTY CLTISNSYGQ ALSESPKETV RITSRKVCGG VVLCGVSTTL LPYSHHQVFD FLRHDHGRSQ MEEMFNENPF QEVAHIANGS HPGNCISLLH
601: FHGASSSNNV EWMLQETCTD NSGSLVVYST VHANAVQLAM SGEDPSRIPL LPLGFSVVPV NQPHVVEGIS VNLDSCLLTV AIQVLVSNAT TATLNLSTTV
701: INNRICSTVY RISSALGSPL LPEIPSSFKQ EISN
101: THQIQEMEAF FKVNPHPNDD DKTRLSEELG LTPLQVKFWF QNRRNQIKIE QDRSDNKMLK AENETLKTEN RKLQFDLQRL SCSSCGGSRD KLHLENYRLR
201: QELDRLHSIA SLMNPCLPPP ETACLFPDMK DNITNNLLIA KEDKAVAMDL AVSCVQELAK MCATNEPLWN KKGSDNEIIS LNEDVYKKMF QWPSVDDNHF
301: RREASRANTV VIMNSITLVN AFLDADKWSE MFCSIVSRAK TIQIISSGVS GASGSLLLMY AELQVPSPLV PTREIYFLRY VKQNAEAGKW MIVDFPVDGL
401: IKPASGITTT DQYRRKPSGF IIQDMSNGYS QITWVEHVEV EEKHVHHEMV REYVESGAAF GAERWLAVLR RQCERMASLM ATNITDLGVI PSVEAKRKLM
501: KLSESMVRTY CLTISNSYGQ ALSESPKETV RITSRKVCGG VVLCGVSTTL LPYSHHQVFD FLRHDHGRSQ MEEMFNENPF QEVAHIANGS HPGNCISLLH
601: FHGASSSNNV EWMLQETCTD NSGSLVVYST VHANAVQLAM SGEDPSRIPL LPLGFSVVPV NQPHVVEGIS VNLDSCLLTV AIQVLVSNAT TATLNLSTTV
701: INNRICSTVY RISSALGSPL LPEIPSSFKQ EISN
001: METKDKKEKG HMVLNSDNVF GSVSSSPTTT IQNPNYFTSF ENPNFPYIFP KEEYEVMSKI ESGSGKSTGS GHDPVENTAI EQEPPAAKKK RYHRHTASQI
101: QQMEALFKEN AHPDTKTRLR LSKKLGLSPI QVKFWFQNKR TQIKAQQSRS DNAKLKAENE TLKTESQNIQ SNFQCLFCST CGHNLRLENA RLRQELDRLR
201: SIVSMRNPSP SQEITPETNK NNNDNMLIAE EEKAIDMELA VSCARELAKM CDINEPLWNK KRLDNESVCL NEEEYKKMFL WPLMNDDDRF RREASRANAV
301: IMLNCITLVK AFLDADKWSE MFFPIVSSAK TAQIISSGAS GPSGTLLLMF AELQVVSPLV PTREAYFLRY VEQNAEEGKW MVVDFPIDRI KPASATTTDQ
401: YRRKPSGCII QAMRNGYSQV TWVEHVEVEE KHVQDEVVRE FVESGVAFGA ERWLSVLKRQ CERMASLMAT NITDLGVIPS VEARKNLMKL SQRMVKTFCL
501: NIINSHGQAP TKDTVKIVSR KVCGGLVPCA VSVTLLPYSH QQVFDLLRDN QRLSQLEILF MGSSFQEVAH IANGSHLGNS ISLLRINVES NSSHNVELML
601: QETCTDNSGS LLVYSTVDPV AVQLAMNGED PSEIPLLPVG FSVVPVNPSD GVEGSSVSSP SCLLTVAIQV LGSNVTTERL DLSTVSVINH RICATVNRIT
701: SALVNDVGN
101: QQMEALFKEN AHPDTKTRLR LSKKLGLSPI QVKFWFQNKR TQIKAQQSRS DNAKLKAENE TLKTESQNIQ SNFQCLFCST CGHNLRLENA RLRQELDRLR
201: SIVSMRNPSP SQEITPETNK NNNDNMLIAE EEKAIDMELA VSCARELAKM CDINEPLWNK KRLDNESVCL NEEEYKKMFL WPLMNDDDRF RREASRANAV
301: IMLNCITLVK AFLDADKWSE MFFPIVSSAK TAQIISSGAS GPSGTLLLMF AELQVVSPLV PTREAYFLRY VEQNAEEGKW MVVDFPIDRI KPASATTTDQ
401: YRRKPSGCII QAMRNGYSQV TWVEHVEVEE KHVQDEVVRE FVESGVAFGA ERWLSVLKRQ CERMASLMAT NITDLGVIPS VEARKNLMKL SQRMVKTFCL
501: NIINSHGQAP TKDTVKIVSR KVCGGLVPCA VSVTLLPYSH QQVFDLLRDN QRLSQLEILF MGSSFQEVAH IANGSHLGNS ISLLRINVES NSSHNVELML
601: QETCTDNSGS LLVYSTVDPV AVQLAMNGED PSEIPLLPVG FSVVPVNPSD GVEGSSVSSP SCLLTVAIQV LGSNVTTERL DLSTVSVINH RICATVNRIT
701: SALVNDVGN
Arabidopsis Description
HDG4Homeobox-leucine zipper protein HDG4 [Source:UniProtKB/Swiss-Prot;Acc:Q8L7H4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.