Subcellular Localization
min:
: max
Winner_takes_all: golgi, plastid, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- golgi 1
- mitochondrion 1
- plastid 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra001412.1-P | Field mustard | nucleus | 89.16 | 94.81 |
| CDX73866 | Canola | cytosol | 91.06 | 91.06 |
| CDY01038 | Canola | plastid | 76.69 | 46.39 |
| CDY08511 | Canola | plastid | 76.42 | 45.85 |
| AT3G11590.1 | Thale cress | plastid | 76.15 | 45.18 |
| VIT_08s0007g02790.t01 | Wine grape | plastid | 54.74 | 30.7 |
| KRG96225 | Soybean | nucleus | 54.47 | 30.69 |
| KRH67971 | Soybean | plastid | 53.66 | 30.0 |
| PGSC0003DMT400072353 | Potato | plastid | 49.86 | 28.09 |
| Solyc10g083190.1.1 | Tomato | plastid | 48.78 | 27.23 |
| Os02t0506100-00 | Rice | plastid | 23.04 | 19.5 |
| HORVU2Hr1G069400.8 | Barley | nucleus | 24.12 | 17.49 |
| CDY67997 | Canola | mitochondrion, plastid | 21.68 | 16.99 |
| CDX70996 | Canola | nucleus | 21.68 | 16.84 |
| Os04t0382800-00 | Rice | nucleus | 26.02 | 16.81 |
| GSMUA_Achr6P16290_001 | Banana | nucleus | 27.91 | 16.69 |
| CDX92367 | Canola | mitochondrion, plastid | 21.41 | 16.46 |
| EES11990 | Sorghum | nucleus | 25.2 | 16.37 |
| Zm00001d025208_P002 | Maize | nucleus | 25.75 | 16.21 |
| Zm00001d003996_P001 | Maize | nucleus | 24.93 | 16.17 |
| TraesCS2A01G282200.1 | Wheat | nucleus | 24.66 | 16.08 |
| GSMUA_Achr6P08260_001 | Banana | nucleus | 24.93 | 16.06 |
| CDX88802 | Canola | nucleus | 20.33 | 16.03 |
| TraesCS2B01G299400.1 | Wheat | nucleus, plastid | 24.12 | 15.98 |
| TraesCS2D01G281000.1 | Wheat | nucleus, plastid | 24.12 | 15.72 |
| TraesCS7B01G035800.1 | Wheat | nucleus | 22.49 | 14.36 |
| TraesCS7D01G134000.1 | Wheat | nucleus | 22.49 | 14.34 |
| TraesCS7A01G134600.1 | Wheat | nucleus | 22.22 | 14.16 |
| CDX80001 | Canola | nucleus | 11.92 | 13.25 |
| Zm00001d000402_P001 | Maize | mitochondrion | 19.51 | 13.14 |
| KXG30263 | Sorghum | mitochondrion | 21.41 | 12.7 |
| CDY34403 | Canola | nucleus | 19.51 | 12.52 |
| CDY25566 | Canola | nucleus | 19.24 | 12.26 |
| CDY42023 | Canola | nucleus | 13.82 | 12.2 |
| CDY39728 | Canola | nucleus | 19.51 | 12.08 |
| CDY44461 | Canola | nucleus | 19.24 | 11.77 |
| CDY22812 | Canola | nucleus | 19.78 | 11.06 |
| CDY37111 | Canola | nucleus | 20.33 | 11.05 |
| CDX80002 | Canola | cytosol | 1.36 | 10.87 |
| CDY25414 | Canola | mitochondrion | 18.7 | 10.83 |
| CDY29821 | Canola | mitochondrion | 18.7 | 10.8 |
Protein Annotations
| EnsemblPlants:CDY56601 | EnsemblPlantsGene:GSBRNA2T00019781001 | ncoils:Coil | PANTHER:PTHR31071 | PANTHER:PTHR31071:SF7 | ProteinID:CDY56601 |
| ProteinID:CDY56601.1 | SEG:seg | UniParc:UPI0004EEB386 | UniProt:A0A078J309 | MapMan:35.2 | : |
Description
BnaC03g73450DBnaC03g73450D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J309]
Coordinates
chrLK033503:-:41208..42877
Molecular Weight (calculated)
42171.2 Da
IEP (calculated)
8.470
GRAVY (calculated)
-0.785
Length
369 amino acids
Sequence
(BLAST)
(BLAST)
001: MEGTGSRQRK GSSTAQKLRL GDCNVEAKNH VSNGSFMDVT LTEFVMIGLF CLCHLQIHLR SMNKRLNLVC SMQIETRSRA VTPTGTTMGV KTRLKECSNA
101: LTTSKELLKI INRMWGQETR PSSSTSLVSA LHSELERARL QVNQLIHEHN KQENNDVTYL MKRFAKEWKS NEQQVVEAAI ESVAGELEAE RKLRRRSERL
201: NKKLGKELAE TKAALMKVKE EVEKEREMLQ LADALREERV QMKLSEYMNH HVEEDGEVED EHEEEYDLHS IELNIDKSYK WPYGECKSLS LQRSVSDCVD
301: WVVQSGKLQK SGEGYLDDTQ GYKPNKASSK DQHLLSGPRL SKFRGGSVPK SWLSDAAKGE NQIARRSRW
101: LTTSKELLKI INRMWGQETR PSSSTSLVSA LHSELERARL QVNQLIHEHN KQENNDVTYL MKRFAKEWKS NEQQVVEAAI ESVAGELEAE RKLRRRSERL
201: NKKLGKELAE TKAALMKVKE EVEKEREMLQ LADALREERV QMKLSEYMNH HVEEDGEVED EHEEEYDLHS IELNIDKSYK WPYGECKSLS LQRSVSDCVD
301: WVVQSGKLQK SGEGYLDDTQ GYKPNKASSK DQHLLSGPRL SKFRGGSVPK SWLSDAAKGE NQIARRSRW
001: MERSGTGSRQ RRASSTVQKL RLGDCNVGAR DPINSGSFMD IETRSRVETP TGSTVGVKTR LKDCSNALTT SKELLKIINR MWGQDDRPSS SMSLVSALHS
101: ELERARLQVN QLIHEHKPEN NDISYLMKRF AEEKAVWKSN EQEVVEAAIE SVAGELEVER KLRRRFESLN KKLGKELAET KSALMKAVKE IENEKRARVM
201: VEKVCDELAR DISEDKAEVE ELKRESFKVK EEVEKEREML QLADALREER VQMKLSEAKH QLEEKNAAVD KLRNQLQTYL KAKRCKEKTR EPPQTQLHNE
301: EAGDYLNHHI SFGSYNIEDG EVENGNEEGS GESDLHSIEL NIDNKSYKWP YGEENRGRKS TPRKSLSLQR SISDCVDWVV QSEKLQKSGD GGLDWGRSID
401: VEPKGYIDET QAYKPNKASS KDHHILSGSR LSNFRGGSVS KSRLSDASKG ENQNARKSRW
101: ELERARLQVN QLIHEHKPEN NDISYLMKRF AEEKAVWKSN EQEVVEAAIE SVAGELEVER KLRRRFESLN KKLGKELAET KSALMKAVKE IENEKRARVM
201: VEKVCDELAR DISEDKAEVE ELKRESFKVK EEVEKEREML QLADALREER VQMKLSEAKH QLEEKNAAVD KLRNQLQTYL KAKRCKEKTR EPPQTQLHNE
301: EAGDYLNHHI SFGSYNIEDG EVENGNEEGS GESDLHSIEL NIDNKSYKWP YGEENRGRKS TPRKSLSLQR SISDCVDWVV QSEKLQKSGD GGLDWGRSID
401: VEPKGYIDET QAYKPNKASS KDHHILSGSR LSNFRGGSVS KSRLSDASKG ENQNARKSRW
Arabidopsis Description
At3g11590/F24K9_26 [Source:UniProtKB/TrEMBL;Acc:Q9CAW9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.