Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra004552.1-P | Field mustard | nucleus | 100.0 | 11.16 |
| CDY42023 | Canola | nucleus | 93.48 | 10.29 |
| AT2G46250.1 | Thale cress | nucleus | 65.22 | 6.41 |
| CDY34403 | Canola | nucleus | 26.09 | 2.09 |
| CDY25566 | Canola | nucleus | 26.09 | 2.07 |
| CDY22812 | Canola | nucleus | 23.91 | 1.67 |
| CDY37111 | Canola | nucleus | 23.91 | 1.62 |
| CDY25414 | Canola | mitochondrion | 19.57 | 1.41 |
| CDY56601 | Canola | cytosol, golgi, plastid | 10.87 | 1.36 |
| CDY39728 | Canola | nucleus | 17.39 | 1.34 |
| CDY44461 | Canola | nucleus | 17.39 | 1.33 |
| CDY29821 | Canola | mitochondrion | 17.39 | 1.25 |
| CDX73866 | Canola | cytosol | 8.7 | 1.08 |
| CDY01038 | Canola | plastid | 13.04 | 0.98 |
| CDY08511 | Canola | plastid | 13.04 | 0.98 |
| CDX88802 | Canola | nucleus | 2.17 | 0.21 |
| CDX70996 | Canola | nucleus | 2.17 | 0.21 |
| CDX92367 | Canola | mitochondrion, plastid | 2.17 | 0.21 |
| CDX80001 | Canola | nucleus | 0.0 | 0.0 |
| CDY67997 | Canola | mitochondrion, plastid | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:CDX80002 | EnsemblPlantsGene:GSBRNA2T00132874001 | ProteinID:CDX80002 | ProteinID:CDX80002.1 | UniParc:UPI0004EEE571 | MapMan:35.2 |
Description
BnaA05g01540D
Coordinates
chrLK031819:+:1241412..1241552
Molecular Weight (calculated)
5346.6 Da
IEP (calculated)
11.865
GRAVY (calculated)
-0.750
Length
46 amino acids
Sequence
(BLAST)
(BLAST)
1: MSRTFSKSVM VREESRSLKD KLMEARVESR RLRSLKSTPS HPVQAI
001: MSFNLQPPSR ASLRRQIAAT DDYRNGDLLQ PISPASCSSS SSSLQVVVRK PAFSQTGSSA VKSASYGLGS STKLLKVLNR IWSLEEQNTA NMSLVRALKM
101: ELDECRAEIK EVQQRKKLSD RPLRKKKEEE EVKDVFRSIK RELDDERKVR KESETLHRKL TRELCEAKHC LSKALKDLEK ETQERVVVEN LCDEFAKAVK
201: DYEDKVRRIG KKSPVSDKVI VQIAEVWSDQ RLQMKLEEDD KTFLLRAKEK SRSQSSKGSG LRAKPDDSVS MHQRVCLKEL EEGLEKRTRR DNKLQLKKSS
301: GQVLNLSMSS EGDKIHPESS PRNVDDHESQ EKSRTFSKNH PRNVNVMIRE DNHRTLKDKL MEARVESRRL RSSLKPE
101: ELDECRAEIK EVQQRKKLSD RPLRKKKEEE EVKDVFRSIK RELDDERKVR KESETLHRKL TRELCEAKHC LSKALKDLEK ETQERVVVEN LCDEFAKAVK
201: DYEDKVRRIG KKSPVSDKVI VQIAEVWSDQ RLQMKLEEDD KTFLLRAKEK SRSQSSKGSG LRAKPDDSVS MHQRVCLKEL EEGLEKRTRR DNKLQLKKSS
301: GQVLNLSMSS EGDKIHPESS PRNVDDHESQ EKSRTFSKNH PRNVNVMIRE DNHRTLKDKL MEARVESRRL RSSLKPE
Arabidopsis Description
At2g46250/T3F17.10 [Source:UniProtKB/TrEMBL;Acc:O82344]
SUBAcon: [nucleus,plastid]
SUBAcon: [nucleus,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.