CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY22812	Canola	nucleus	94.26	96.97
AT1G50660.1	Thale cress	nucleus	87.04	81.52
CDY29821	Canola	mitochondrion	57.73	61.35
CDY25414	Canola	mitochondrion	57.44	61.22
KRH46168	Soybean	nucleus	57.0	55.36
KRG98777	Soybean	nucleus	56.85	55.22
VIT_19s0090g00370.t01	Wine grape	plastid	57.44	54.39
Solyc07g064580.2.1	Tomato	nucleus	53.31	53.79
KRH73733	Soybean	nucleus	54.64	53.69
KRH14411	Soybean	nucleus	54.49	53.62
PGSC0003DMT400071667	Potato	nucleus	52.58	52.42
PGSC0003DMT400057488	Potato	nucleus	52.87	51.88
Solyc12g005010.1.1	Tomato	nucleus	50.81	51.42
GSMUA_Achr6P00380_001	Banana	nucleus	29.75	47.2
GSMUA_Achr7P00230_001	Banana	nucleus	34.17	47.06
GSMUA_Achr8P01540_001	Banana	nucleus	34.76	46.64
GSMUA_Achr6P19720_001	Banana	nucleus	47.72	46.22
GSMUA_Achr9P30230_001	Banana	nucleus, plastid	45.8	43.62
GSMUA_Achr10P...	Banana	nucleus, plastid	45.07	43.4
TraesCS1B01G329400.1	Wheat	plastid	40.65	42.01
TraesCS1D01G317000.1	Wheat	nucleus, plastid	40.5	41.86
GSMUA_Achr2P03040_001	Banana	nucleus	28.13	41.7
TraesCS1A01G317000.1	Wheat	plastid	40.5	41.6
Zm00001d026344_P001	Maize	plastid	41.24	40.76
EES12886	Sorghum	plastid	41.53	40.75
HORVU1Hr1G066770.1	Barley	mitochondrion, plasma membrane	40.5	40.74
Zm00001d002252_P001	Maize	plastid	40.94	40.52
Os04t0625000-01	Rice	nucleus	40.8	39.8
Zm00001d012593_P001	Maize	plastid	34.9	39.57
EES19759	Sorghum	plastid	38.88	39.52
TraesCS2B01G492000.1	Wheat	plastid	39.62	39.27
TraesCS2A01G469100.1	Wheat	plastid	39.76	38.96
Zm00001d043218_P001	Maize	plastid	38.59	38.93
TraesCS2D01G469200.1	Wheat	plastid	39.32	38.64
Zm00001d038595_P001	Maize	nucleus, plastid	38.14	38.43
EES01592	Sorghum	plastid	38.14	38.31
Os08t0190700-00	Rice	nucleus	32.55	37.27
OQU80028	Sorghum	plastid	36.08	37.12
Zm00001d000005_P002	Maize	plastid	35.2	34.69
TraesCS7A01G295000.1	Wheat	plastid	31.37	33.92
TraesCS7D01G288600.1	Wheat	plastid	31.37	33.13
TraesCS7B01G197400.1	Wheat	plastid	31.37	33.07
HORVU7Hr1G065950.7	Barley	vacuole	31.22	32.22
GSMUA_Achr4P23750_001	Banana	cytosol	18.41	30.64
CDX70996	Canola	nucleus	16.79	24.0
CDY01038	Canola	plastid	21.5	23.93
CDX80002	Canola	cytosol	1.62	23.91
CDY08511	Canola	plastid	21.5	23.74
CDX88802	Canola	nucleus	16.2	23.5
CDX92367	Canola	mitochondrion, plastid	16.05	22.71
CDY67997	Canola	mitochondrion, plastid	15.46	22.29
CDY42023	Canola	nucleus	13.11	21.29
CDX80001	Canola	nucleus	10.31	21.08
CDY56601	Canola	cytosol, golgi, plastid	11.05	20.33
CDX73866	Canola	cytosol	10.6	19.51
CDY34403	Canola	nucleus	16.05	18.96
CDY25566	Canola	nucleus	15.91	18.65
CDY39728	Canola	nucleus	16.2	18.46
CDY44461	Canola	nucleus	16.35	18.41

Protein Annotations

EnsemblPlants:CDY37111	EnsemblPlantsGene:GSBRNA2T00063332001	ncoils:Coil	PANTHER:PTHR31071	PANTHER:PTHR31071:SF2	ProteinID:CDY37111
ProteinID:CDY37111.1	SEG:seg	UniParc:UPI0004EF013B	UniProt:A0A078HHD3	MapMan:35.1	:

Description

BnaC06g03880DBnaC06g03880D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HHD3]

Coordinates

chrLK032392:-:24111..27348

Molecular Weight (calculated)

76843.5 Da

IEP (calculated)

7.704

GRAVY (calculated)

-0.916

Length

679 amino acids

Sequence
(BLAST)

001: MKVTGKPYPT ATLQASESET KLFTNPPDLR AIQRATTVTK RRARNPSLTR QRRSAAPGGR RSRPETPLLK WKVEDRNRER GGVVEEDDDY EDERETTSRR
101: KDRRKTTRPV SARKLAAGLW RLQVPDAVVS GGERKVKEGL GFQGGVPYLY HHSDKPSGGS KNRIRQNPST IATTKNGFLC TLEPSMPFPH SAMEGATKWD
201: PVCMDTTDEV HQIYSNMKRI DQQVNAVSLV TSLEAELEEA HARIDELESE KRSHKKKLEQ FLRKVSEERA AWRSREHEKV RAIIDDMKSD MNREKKTRQR
301: LEIVNHKLVN ELADSKVAAK RYMQDFEKER KTRELIEEVC DELAKEIGED KAEIEALKRE SMSLREEVDD ERRMLQMAEV WREERVQMKL IDAKVALEEK
401: YSQMNKLVAG LESFLKTRDV VITDVKEVRE AEVLRESAAS VDIQEIKEFA YEPANPDDIF AMLEEMNLGE GHDDKEMEKK PVAYTHQNEE DDSGWETVSH
501: VEEQGSSYSP DGSIPSVNNH NHRESNASSC GGGTDFLGKG WEETPTTEIS EVCSVPRRSS SKKVSSIAKL WRSSGASNNG DNNSFKVISM EGRKSSVGMV
601: SSPERGSSKG GFSPMMDLVG QWSSSPESAS HPHVNRGGMK GCIEWPRGAA QKHSLKAKLI EARIESQKVQ LKHVLKQKI

Best Arabidopsis Sequence Match ( AT1G50660.1 )
(BLAST)

001: MKVTGKPYST ATLPAFESDK NLFSHGPDLR AIQRATTVTK RRARNPSLTR QRRSGPSGGR RSRPETPLLK WKVEDRNKER SGVVEDDDYE DDNHQVARSE
101: TTRRKDRRKI ARPVSVRKLA AGLWRLQVPD ASSSGGERKG KEGLGFQGNG GYMGVPYLYH HSDKPSGGQS NKIRQNPSTI ATTKNGFLCK LEPSMPFPHS
201: AMEGATKWDP VCLDTMEEVH QIYSNMKRID QQVNAVSLVS SLEAELEEAH ARIEDLESEK RSHKKKLEQF LRKVSEERAA WRSREHEKVR AIIDDMKTDM
301: NREKKTRQRL EIVNHKLVNE LADSKLAVKR YMQDYEKERK ARELIEEVCD ELAKEIGEDK AEIEALKRES MSLREEVDDE RRMLQMAEVW REERVQMKLI
401: DAKVALEERY SQMNKLVGDL ESFLRSRDIV TDVKEVREAE LLRETAASVN IQEIKEFTYV PANPDDIYAV FEEMNLGEAH DREMEKSVAY SPISHDSKVH
501: TVSLDANMMN KKGRHSDAYT HQNGDIEEDD SGWETVSHLE EQGSSYSPDG SIPSVNNKNH NHRHSNASSG GTESLGKVWD DTMTPTTEIS EVCSIPRRSS
601: KKVSSIAKLW RSTGASNGDR DSNYKVISME GMNGGRVSNG RKSSAGMVSP DRVSSKGGFS PMMDLVGQWN SSPESANHPH VNRGGMKGCI EWPRGAQKSS
701: LKSKLIEARI ESQKVQLKHV LKQRI

Arabidopsis Description

Actin cytoskeleton-regulatory complex pan-like protein [Source:UniProtKB/TrEMBL;Acc:Q9LPT5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.