Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G64180.1 | CDY11652 | AT1G69810.1 | 21798944 |
| AT1G64180.1 | CDY56082 | AT1G69810.1 | 21798944 |
| AT1G64180.1 | CDY68857 | AT1G69810.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY34403 | Canola | nucleus | 93.78 | 94.43 |
| Bra027683.1-P | Field mustard | nucleus | 93.61 | 94.1 |
| AT1G64180.1 | Thale cress | nucleus | 74.78 | 73.02 |
| CDY39728 | Canola | nucleus | 58.89 | 57.21 |
| CDY44461 | Canola | nucleus | 58.55 | 56.22 |
| KRH77618 | Soybean | nucleus | 47.5 | 41.29 |
| KRH27868 | Soybean | nucleus | 45.94 | 39.76 |
| VIT_02s0025g00840.t01 | Wine grape | nucleus | 46.29 | 39.35 |
| Solyc08g081830.2.1 | Tomato | nucleus, plastid | 42.66 | 36.43 |
| CDX80001 | Canola | nucleus | 20.73 | 36.14 |
| PGSC0003DMT400032084 | Potato | nucleus | 42.31 | 36.14 |
| CDY42023 | Canola | nucleus | 23.83 | 33.01 |
| GSMUA_Achr10P... | Banana | nucleus | 35.92 | 30.86 |
| Os02t0260500-00 | Rice | nucleus | 25.39 | 29.58 |
| GSMUA_Achr10P... | Banana | nucleus | 33.51 | 29.44 |
| Zm00001d053356_P002 | Maize | nucleus | 28.67 | 26.18 |
| KXG29970 | Sorghum | nucleus | 31.61 | 26.14 |
| CDX80002 | Canola | cytosol | 2.07 | 26.09 |
| OQU76466 | Sorghum | nucleus | 31.78 | 25.81 |
| Zm00001d037050_P001 | Maize | nucleus | 28.5 | 24.92 |
| TraesCS7A01G344200.1 | Wheat | nucleus | 31.09 | 24.0 |
| TraesCS7D01G335400.1 | Wheat | nucleus | 30.74 | 23.92 |
| TraesCS7B01G238900.1 | Wheat | nucleus | 30.05 | 23.2 |
| CDX70996 | Canola | nucleus | 17.44 | 21.26 |
| HORVU7Hr1G080670.9 | Barley | nucleus, plastid | 30.57 | 21.05 |
| CDX88802 | Canola | nucleus | 16.75 | 20.73 |
| CDX92367 | Canola | mitochondrion, plastid | 16.58 | 20.0 |
| CDY67997 | Canola | mitochondrion, plastid | 15.89 | 19.53 |
| CDX73866 | Canola | cytosol | 12.44 | 19.51 |
| CDY01038 | Canola | plastid | 20.55 | 19.51 |
| CDY08511 | Canola | plastid | 20.55 | 19.35 |
| CDY56601 | Canola | cytosol, golgi, plastid | 12.26 | 19.24 |
| Os06t0507900-01 | Rice | cytosol, nucleus | 10.54 | 18.54 |
| CDY37111 | Canola | nucleus | 18.65 | 15.91 |
| CDY22812 | Canola | nucleus | 16.93 | 14.85 |
| CDY25414 | Canola | mitochondrion | 15.89 | 14.44 |
| CDY29821 | Canola | mitochondrion | 15.2 | 13.77 |
Protein Annotations
| EnsemblPlants:CDY25566 | EnsemblPlantsGene:GSBRNA2T00032827001 | ncoils:Coil | PANTHER:PTHR31071 | PANTHER:PTHR31071:SF9 | ProteinID:CDY25566 |
| ProteinID:CDY25566.1 | SEG:seg | UniParc:UPI0004EE12F6 | UniProt:A0A078GJQ1 | MapMan:35.1 | : |
Description
BnaC09g11910DBnaC09g11910D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GJQ1]
Coordinates
chrLK032176:+:556926..559387
Molecular Weight (calculated)
65906.4 Da
IEP (calculated)
9.233
GRAVY (calculated)
-1.056
Length
579 amino acids
Sequence
(BLAST)
(BLAST)
001: MKSKEEEEEE EDGGGGEGQK GKSLIEKLRR RAVSVGHRRV FRPPSTPAHI SFNPNNPSSS SKFASSSRKL AASLWEFYQY YDQDHDIPPV AKMHRAPFSY
101: GGDPSNRRLR HGHGKSAVGD NGLDLTDDQP ESAGSIRKQI GQMLMKHHQL TQRNDHPLQP LSPASSLEVA PYKGAITPGS SLDLHGRRRA GEPNNNNLKT
201: STELLKVLNR IWSLEEQHSA NISLIKSLKS ELAHSRARIK ELLRCQQADR REMDELVKQL AEERLSKDTK ERDRLSSAVQ SLEEERKLRR RSESLQRKLA
301: RELSEAKSTL SHCVDEMERG SKSKKMLERL CDEFARGIKS YEREVHGLKQ KVDKSWEGWG EEDQMVLCIA ETWLDERIQS GEEGSVLEKL KLEIEAFLES
401: KQKLSGNEIP KNRRSSLESA PFHATSAPIQ EVDSEEEEEE DSNCFELKKH GTVERRRSQS PSSLQVKFED QMAWAMSNNE KKNKKSRDVE ADKGEKERNN
501: AVGEMIRTHR RLLSETQGID EGSCSYQPSR RAESLIRHWN PRAMTSDLTA QGVKDNTLKA KLSEARTKSS RPRIRLFKG
101: GGDPSNRRLR HGHGKSAVGD NGLDLTDDQP ESAGSIRKQI GQMLMKHHQL TQRNDHPLQP LSPASSLEVA PYKGAITPGS SLDLHGRRRA GEPNNNNLKT
201: STELLKVLNR IWSLEEQHSA NISLIKSLKS ELAHSRARIK ELLRCQQADR REMDELVKQL AEERLSKDTK ERDRLSSAVQ SLEEERKLRR RSESLQRKLA
301: RELSEAKSTL SHCVDEMERG SKSKKMLERL CDEFARGIKS YEREVHGLKQ KVDKSWEGWG EEDQMVLCIA ETWLDERIQS GEEGSVLEKL KLEIEAFLES
401: KQKLSGNEIP KNRRSSLESA PFHATSAPIQ EVDSEEEEEE DSNCFELKKH GTVERRRSQS PSSLQVKFED QMAWAMSNNE KKNKKSRDVE ADKGEKERNN
501: AVGEMIRTHR RLLSETQGID EGSCSYQPSR RAESLIRHWN PRAMTSDLTA QGVKDNTLKA KLSEARTKSS RPRIRLFKG
001: MKSKEEEEEE EEEDDGGEGQ KGKRFIEKLR RRAVFVGHRS VFRRPSTPVH ISFNPNKNPS SASSRKLAAS LWEFYQYYDN DHLIHPPAAT KMHRAPLGSA
101: GPSNSRRLRH GHGKAAVADN NGIELTDHQP ESAGSIRRQI GQMLMKHHHL TERNDHALQP VSPTSYDSSL EFRGRRRAGE PNNNIKTSTE LLKVLNRIWI
201: LEEQHSANIS LIKSLKTELA HSRARIKDLL RCKQADKRDM DDFVKQLAEE KLSKGTKEHD RLSSAVQSLE DERKLRKRSE SLYRKLAQEL SEVKSTLSNC
301: VKEMERGTES KKILERLCDE FAKGIKSYER EIHGLKQKLD KNWKGWDEQD HMILCIAESW LDERIQSGNG SALEKLEFEI ETFLKTNQNA DSNEIARNRR
401: TSLESVPFNA MSAPIWEVDR EEEEDSGGSG SNCFELKKHG SDVAKPPRGD ETEKPELIKV GVSERPQRRS QSPSSLQVKF EDQMAWAMSS NEKKKTRANE
501: MEPETEKCGK ETNNVVGEMI RTHRRLSSET REIDEASCSY PSRRRESPIR QWNTRTVTPD LGAPRGVKDN TLKTKLSEAR TTSSRPRVRL FKD
101: GPSNSRRLRH GHGKAAVADN NGIELTDHQP ESAGSIRRQI GQMLMKHHHL TERNDHALQP VSPTSYDSSL EFRGRRRAGE PNNNIKTSTE LLKVLNRIWI
201: LEEQHSANIS LIKSLKTELA HSRARIKDLL RCKQADKRDM DDFVKQLAEE KLSKGTKEHD RLSSAVQSLE DERKLRKRSE SLYRKLAQEL SEVKSTLSNC
301: VKEMERGTES KKILERLCDE FAKGIKSYER EIHGLKQKLD KNWKGWDEQD HMILCIAESW LDERIQSGNG SALEKLEFEI ETFLKTNQNA DSNEIARNRR
401: TSLESVPFNA MSAPIWEVDR EEEEDSGGSG SNCFELKKHG SDVAKPPRGD ETEKPELIKV GVSERPQRRS QSPSSLQVKF EDQMAWAMSS NEKKKTRANE
501: MEPETEKCGK ETNNVVGEMI RTHRRLSSET REIDEASCSY PSRRRESPIR QWNTRTVTPD LGAPRGVKDN TLKTKLSEAR TTSSRPRVRL FKD
Arabidopsis Description
Intracellular protein transport protein USO1-like protein [Source:UniProtKB/TrEMBL;Acc:F4I5B1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.