CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX75812
CDX82445
CDY11652
CDY39879
CDY56082
CDY68857

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G69810.1	CDY11652	AT1G69810.1	21798944
AT1G69810.1	CDY56082	AT1G69810.1	21798944
AT1G69810.1	CDY68857	AT1G69810.1	21798944
AT1G69810.1	CDY39879	AT2G25000.1	21798944
AT1G69810.1	CDX75812	AT3G15160.1	21798944
AT1G69810.1	CDX82445	AT3G15160.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra007884.1-P	Field mustard	nucleus	98.96	98.96
CDY68857	Canola	nucleus	92.69	95.95
CDY11652	Canola	nucleus	76.5	76.5
AT1G69810.1	Thale cress	nucleus	71.8	71.06
CDX86714	Canola	nucleus	14.36	64.71
CDX97845	Canola	nucleus	20.63	32.78
CDY26717	Canola	nucleus	20.89	27.87
CDX81493	Canola	nucleus	22.45	27.74
CDX96692	Canola	nucleus	36.03	26.69
CDX83804	Canola	nucleus	35.25	26.21
CDY01891	Canola	nucleus	22.19	25.91
CDY63770	Canola	nucleus	34.46	25.68
CDX81900	Canola	nucleus	34.73	25.63
CDX96044	Canola	nucleus	21.67	25.3
CDY21693	Canola	nucleus	34.2	25.24
CDX69548	Canola	nucleus	28.2	25.0
CDX85563	Canola	nucleus	19.84	24.52
CDX70593	Canola	nucleus	33.42	24.33
CDY22299	Canola	nucleus	18.28	24.14
CDY67287	Canola	nucleus	18.28	24.14
CDX78611	Canola	nucleus	33.16	24.1
CDX85052	Canola	nucleus	34.46	24.0
CDX88573	Canola	nucleus	18.8	23.92
CDX69549	Canola	nucleus	34.2	23.77
CDX79347	Canola	nucleus	18.28	23.49
CDY22006	Canola	nucleus	30.03	23.47
CDX87347	Canola	nucleus	18.28	23.33
CDY07121	Canola	nucleus	30.03	23.23
CDX67971	Canola	nucleus	18.02	23.23
CDX94553	Canola	nucleus	29.5	23.01
CDY16669	Canola	nucleus	29.5	22.97
CDX72327	Canola	nucleus	16.97	22.81
CDX75196	Canola	nucleus	16.71	22.61
CDX82900	Canola	nucleus	30.55	22.46
CDY28692	Canola	nucleus	31.33	22.3
CDY12937	Canola	nucleus	32.11	22.28
CDY21301	Canola	nucleus	29.24	22.09
CDX90863	Canola	nucleus	28.98	21.89
CDY19535	Canola	nucleus	31.33	21.74
CDY39879	Canola	nucleus	17.23	21.5
CDY24892	Canola	nucleus	29.24	21.37
CDY08634	Canola	nucleus	27.94	21.27
CDX68787	Canola	nucleus	17.23	20.69
CDY70096	Canola	nucleus	16.71	18.55
CDY72612	Canola	nucleus	11.49	18.26
CDY19255	Canola	nucleus	10.71	17.23
CDX86713	Canola	nucleus	1.31	4.24

Protein Annotations

MapMan:15.5.22	Gene3D:2.20.25.80	GO:A0A078J1W8	UniProt:A0A078J1W8	EnsemblPlants:CDY56082	ProteinID:CDY56082
ProteinID:CDY56082.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	EnsemblPlantsGene:GSBRNA2T00017800001	InterPro:IPR003657	InterPro:IPR036576	PFAM:PF03106	PFscan:PS50811
PANTHER:PTHR31429	PANTHER:PTHR31429:SF24	SMART:SM00774	SUPFAM:SSF118290	UniParc:UPI0004EE7618	InterPro:WRKY_dom
InterPro:WRKY_dom_sf	SEG:seg	:	:	:	:

Description

BnaA02g35700DBnaA02g35700D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J1W8]

Coordinates

chrLK033456:-:7744..10181

Molecular Weight (calculated)

43128.4 Da

IEP (calculated)

7.896

GRAVY (calculated)

-0.891

Length

383 amino acids

Sequence
(BLAST)

001: MIKEEIDSCV HPLDGGMAES DKEVDLDATK AKVDKVREEN EKLKLLLSTV RTEYNSLQMH VSNVIRQQHE ASMKLDDNGH EDLDVDISLT LGRSEQKISK
101: KEEQVKKIIA ENNSIKNKEG SEKKRWAHGL AFRIQSFEDP DTNQTMRLDN LSKEVKNKSV ENKYLFSRKD VKTARNEDQH ELLERHEQPG LKKTRVCVKA
201: PCEDPSINDG CQWRKYGQKT AKTNPLPRAY YRCSMSSNCP VRKQVQRCGE DDTSAYMTTY EGNHDHPLPM EATHMAAGTS AAASLLQSGA SSSASLSHFF
301: PFHHFSVSTT NSHPTVTLDL TQPNYDPNQL PNYPLSSSSL SFSSSGRPSP SKSHTLSFSG LRSQAPMNTY SHLSHQTRLF GRQ

Best Arabidopsis Sequence Match ( AT1G69810.1 )
(BLAST)

001: MIKEETVSYF QTFDGVMAES DKEEELDATK AKVEKVREEN EKLKLLLSTI LNNYNSLQMQ VSKVLGQQQG ASSMELDHID RQDENNDYDV DISLRLGRSE
101: QKISKKEENK VDKISTKNVE ESKDKRSALG FGFQIQSYEA SKLDDLCRQV KLANAENKCV SSRKDVKSVR NENHQDVLEE HEQTGLKKTR VCVKASCEDP
201: SINDGCQWRK YGQKTAKTNP LPRAYYRCSM SSNCPVRKQV QRCGEEETSA FMTTYEGNHD HPLPMEASHM AAGTSAAASL LQSGSSSSSS STSASLSYFF
301: PFHHFSISTT NSHPTVTLDL TRPNYPNQLP DDYPLSSSSF SLNFSSPDPP PPSSHDHTLN FSGLRTQAPL STDSLLARYR TRLSGQQ

Arabidopsis Description

WRKY36At1g69810 [Source:UniProtKB/TrEMBL;Acc:Q058I4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.