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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • mitochondrion 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX96044 Canola nucleus 96.04 96.04
CDX81493 Canola nucleus 79.57 84.19
CDX86714 Canola nucleus 19.21 74.12
AT1G68150.1 Thale cress nucleus 77.13 67.65
PGSC0003DMT400076591 Potato nucleus 43.9 34.87
Solyc01g104550.2.1 Tomato nucleus 47.87 33.05
GSMUA_Achr6P02330_001 Banana nucleus 36.89 32.79
GSMUA_Achr3P20290_001 Banana nucleus 38.11 32.64
CDX97845 Canola nucleus 23.78 32.37
VIT_12s0055g00340.t01 Wine grape nucleus 47.56 32.03
KRH58361 Soybean nucleus 43.6 29.48
GSMUA_Achr7P18820_001 Banana nucleus 38.72 28.29
GSMUA_Achr10P... Banana nucleus 37.5 25.68
TraesCS6D01G306300.1 Wheat nucleus 40.55 23.79
CDY11652 Canola nucleus 27.74 23.76
EES05866 Sorghum nucleus 41.77 23.7
CDY26717 Canola nucleus 20.73 23.69
TraesCS6A01G326500.2 Wheat nucleus 39.94 23.69
CDY68857 Canola nucleus 26.52 23.51
TraesCS6B01G357600.1 Wheat nucleus 39.94 23.39
Zm00001d018203_P001 Maize nucleus 40.85 23.14
CDX85563 Canola nucleus 21.65 22.9
CDY56082 Canola nucleus 25.91 22.19
HORVU6Hr1G079710.2 Barley nucleus 40.24 21.29
CDX72327 Canola nucleus 18.29 21.05
Os02t0770500-00 Rice nucleus 41.16 20.8
CDX69548 Canola nucleus 27.13 20.6
CDX75196 Canola nucleus 17.68 20.49
CDX81900 Canola nucleus 32.01 20.23
CDX83804 Canola nucleus 31.71 20.19
CDX96692 Canola nucleus 31.71 20.12
CDY63770 Canola nucleus 31.4 20.04
CDY21693 Canola nucleus 31.4 19.85
CDX70593 Canola nucleus 31.4 19.58
CDX78611 Canola nucleus 31.4 19.54
CDY39879 Canola nucleus 18.29 19.54
CDY28692 Canola nucleus 32.01 19.52
CDY07121 Canola nucleus 29.27 19.39
CDY22006 Canola nucleus 28.96 19.39
CDY22299 Canola nucleus 17.07 19.31
CDY67287 Canola nucleus 17.07 19.31
CDY16669 Canola nucleus 28.96 19.31
CDX85052 Canola nucleus 32.32 19.27
CDX69549 Canola nucleus 32.32 19.24
CDX94553 Canola nucleus 28.66 19.14
CDX68787 Canola nucleus 18.6 19.12
CDX82900 Canola nucleus 30.18 19.0
CDY24892 Canola nucleus 30.18 18.89
CDX67971 Canola nucleus 17.07 18.86
CDX79347 Canola nucleus 17.07 18.79
CDY21301 Canola nucleus 28.35 18.34
CDX90863 Canola nucleus 28.35 18.34
CDX88573 Canola nucleus 16.77 18.27
CDY19535 Canola nucleus 30.49 18.12
CDY12937 Canola nucleus 30.49 18.12
CDX87347 Canola nucleus 16.46 18.0
CDY70096 Canola nucleus 17.99 17.1
CDY08634 Canola nucleus 25.0 16.3
CDY72612 Canola nucleus 8.54 11.62
CDY19255 Canola nucleus 8.23 11.34
CDX86713 Canola nucleus 0.3 0.85
Protein Annotations
MapMan:15.5.22Gene3D:2.20.25.80GO:A0A078EL60EnsemblPlants:CDY01891ProteinID:CDY01891ProteinID:CDY01891.1
ncoils:CoilGO:GO:0003674GO:GO:0003676GO:GO:0003677GO:GO:0003700GO:GO:0005488
GO:GO:0006139GO:GO:0006355GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009987
GO:GO:0043565EnsemblPlantsGene:GSBRNA2T00113080001InterPro:IPR003657InterPro:IPR036576PFAM:PF03106PFscan:PS50811
PANTHER:PTHR31429PANTHER:PTHR31429:SF24SMART:SM00774SUPFAM:SSF118290UniParc:UPI0004EBA197InterPro:WRKY_dom
InterPro:WRKY_dom_sfSEG:seg::::
Description
BnaC06g29310D
Coordinates
chrLK031929:+:1059668..1061607
Molecular Weight (calculated)
37453.6 Da
IEP (calculated)
5.750
GRAVY (calculated)
-1.054
Length
328 amino acids
Sequence
(BLAST)
001: MDLSLRLEKE KDEERSKHSC EKEEEDDDDG ASEDKDEQMV KEDEIEDFFL SSRTRKEENE REEMQIEMEH VKEENMRLRK LVEQTLQDYR QLEMKFPVID
101: HTDKMDLETF LGAQAKARKK GVERSASLPS VEGELGLSLS LQKKQKREES KAAESHNAQR YNSSSTIQGQ DTTQRVITSS PGNRKARVSV RARCETATMN
201: DGCQWRKYGQ KTAKGNPCPR AYYRCTVAPG CPVRKQVQRC FEDMSILITT YEGTHNHPLP VGATAMASTA STSSFLLLDS SDNLSRPSYF QQNGNDNRSI
301: RSLINFDDPS SRGGDHVSSS QNRLNWMM
Best Arabidopsis Sequence Match ( AT1G68150.1 )
(BLAST)
001: MGFDFSTSKS KAKRQKRIEV RFASPLMGID LSLKLEAEEK KKEIEGSKHS RENKEDEEHD ASGDEDEQMV KEDEDDSSSL GLRTREEENE REELLQLQIQ
101: MESVKEENTR LRKLVEQTLE DYRHLEMKFP VIDKTKKMDL EMFLGVQGKR CVDITSKARK RGAERSPSME REIGLSLSLE KKQKQEESKE AVQSHHQRYN
201: SSSLDMNMPR IISSSQGNRK ARVSVRARCE TATMNDGCQW RKYGQKTAKG NPCPRAYYRC TVAPGCPVRK QVQRCLEDMS ILITTYEGTH NHPLPVGATA
301: MASTASTSPF LLLDSSDNLS HPSYYQTPQA IDSSLITYPQ NSSYNNRTIR SLNFDGPSRG DHVSSSQNRL NWMM
Arabidopsis Description
WRKY9WRKY9 [Source:UniProtKB/TrEMBL;Acc:A0A178WJS2]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.