Factsheet for GSMUA_Achr7P18820_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P20290_001	Banana	nucleus	53.9	63.19
GSMUA_Achr10P...	Banana	nucleus	62.14	58.25
GSMUA_Achr6P02330_001	Banana	nucleus	44.77	54.47
CDX81493	Canola	nucleus	30.07	43.55
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	9.35	43.3
KRH42243	Soybean	nucleus	16.04	39.78
Bra004285.1-P	Field mustard	nucleus	28.95	39.63
CDX96044	Canola	nucleus	28.73	39.33
CDY01891	Canola	nucleus	28.29	38.72
EES05866	Sorghum	nucleus	47.88	37.2
PGSC0003DMT400076591	Potato	nucleus	33.63	36.56
Zm00001d018203_P001	Maize	nucleus	46.55	36.1
TraesCS6D01G306300.1	Wheat	nucleus	44.77	35.96
TraesCS6B01G357600.1	Wheat	nucleus	44.77	35.89
AT1G68150.1	Thale cress	nucleus	29.84	35.83
TraesCS6A01G326500.2	Wheat	nucleus	43.88	35.62
VIT_12s0055g00340.t01	Wine grape	nucleus	37.86	34.91
GSMUA_Achr7P19340_001	Banana	nucleus	14.7	34.38
Solyc01g104550.2.1	Tomato	nucleus	36.3	34.32
Os02t0770500-00	Rice	nucleus	48.78	33.74
GSMUA_Achr1P05240_001	Banana	nucleus	23.39	32.21
HORVU6Hr1G079710.2	Barley	nucleus	44.32	32.1
GSMUA_Achr3P31130_001	Banana	mitochondrion, nucleus	24.72	31.71
GSMUA_Achr2P05100_001	Banana	nucleus	13.36	31.58
GSMUA_Achr5P16460_001	Banana	nucleus	16.26	31.06
GSMUA_Achr10P...	Banana	nucleus	15.81	30.6
KRH58361	Soybean	nucleus	32.74	30.31
GSMUA_Achr7P08850_001	Banana	nucleus	25.61	29.64
GSMUA_Achr10P...	Banana	nucleus	24.05	28.65
GSMUA_Achr7P05200_001	Banana	nucleus	17.82	28.57
GSMUA_Achr11P...	Banana	nucleus	15.37	28.16
GSMUA_Achr3P03090_001	Banana	nucleus	23.61	27.75
GSMUA_Achr3P13440_001	Banana	nucleus	16.7	27.27
GSMUA_Achr7P13400_001	Banana	nucleus	23.83	26.68
GSMUA_Achr2P18390_001	Banana	nucleus	21.6	26.43
GSMUA_Achr10P...	Banana	nucleus	16.93	26.39
GSMUA_Achr11P...	Banana	nucleus	24.5	26.25
GSMUA_Achr6P05880_001	Banana	nucleus	26.95	25.42
GSMUA_Achr4P01930_001	Banana	extracellular, golgi	16.26	25.26
GSMUA_Achr7P16090_001	Banana	endoplasmic reticulum, nucleus, plastid	12.47	25.11
GSMUA_Achr10P...	Banana	nucleus	27.62	25.0
GSMUA_Achr6P07620_001	Banana	nucleus, plastid	27.17	25.0
GSMUA_Achr5P16750_001	Banana	nucleus	26.95	24.9
GSMUA_Achr2P15200_001	Banana	nucleus	28.51	24.06
GSMUA_Achr6P13630_001	Banana	nucleus	27.62	23.66
GSMUA_Achr10P...	Banana	nucleus	25.84	22.75
GSMUA_Achr1P10080_001	Banana	nucleus	16.48	22.09
GSMUA_Achr5P09730_001	Banana	nucleus	21.38	13.48

Protein Annotations

MapMan:15.5.22	Gene3D:2.20.25.80	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0043565	EnsemblPlantsGene:GSMUA_Achr7G18820_001	EnsemblPlants:GSMUA_Achr7P18820_001	EnsemblPlants:GSMUA_Achr7T18820_001	InterPro:IPR003657
InterPro:IPR036576	UniProt:M0TIR9	PFAM:PF03106	PFscan:PS50811	PANTHER:PTHR31429	PANTHER:PTHR31429:SF34
SMART:SM00774	SUPFAM:SSF118290	UniParc:UPI000295D97F	InterPro:WRKY_dom	InterPro:WRKY_dom_sf	SEG:seg

Description

Putative Whole genome shotgun sequence of line PN40024, scaffold_55.assembly12x (Fragment) [Source:GMGC_GENE;Acc:GSMUA_Achr7G18820_001]

Coordinates

chr7:-:21636722..21638389

Molecular Weight (calculated)

49654.6 Da

IEP (calculated)

5.277

GRAVY (calculated)

-0.886

Length

449 amino acids

Sequence
(BLAST)

001: MSSEKREERI MHIDLSLEPA EDEERTLEVG REDGDQQQEG KEEEEGEDKQ ESSNHEEDQE EEKDQSHEKP MKDELCMLQA EMNRMKEENK LLRNVIDRTW
101: KDYHELQMQF AGMQQQDRHP KERQVSNSLG EERLLERKKP GESKEIKEQP SMVADDKELG LSLTLQTYSD PHEREDASFE EKGKCLRSCQ PLDAKLQTGQ
201: LSMTTSQSIN PANRKTRVSV RARCQGPTMN DGCQWRKYGQ KVAKGNPCPR AYYRCTVAPG CPVRKQVQRC LEDMSILVTT YEGTHNHPLP VGATALASTA
301: TAASNFTLLN ETNSSSSIPN HPPLSYLSPF LASPSPHLPT TNSFASFFGA ASSNGHGQQQ LGLLGPMNPW AVSSSNSAIV SGSSWLSSKG VWNSEDGKYS
401: AEKSSATAAD PKLTVTVAAA ISGATLAGKD GESSSRVSNH WVLESASPH

Best Arabidopsis Sequence Match ( AT1G68150.1 )
(BLAST)

001: MGFDFSTSKS KAKRQKRIEV RFASPLMGID LSLKLEAEEK KKEIEGSKHS RENKEDEEHD ASGDEDEQMV KEDEDDSSSL GLRTREEENE REELLQLQIQ
101: MESVKEENTR LRKLVEQTLE DYRHLEMKFP VIDKTKKMDL EMFLGVQGKR CVDITSKARK RGAERSPSME REIGLSLSLE KKQKQEESKE AVQSHHQRYN
201: SSSLDMNMPR IISSSQGNRK ARVSVRARCE TATMNDGCQW RKYGQKTAKG NPCPRAYYRC TVAPGCPVRK QVQRCLEDMS ILITTYEGTH NHPLPVGATA
301: MASTASTSPF LLLDSSDNLS HPSYYQTPQA IDSSLITYPQ NSSYNNRTIR SLNFDGPSRG DHVSSSQNRL NWMM

Arabidopsis Description

WRKY9WRKY9 [Source:UniProtKB/TrEMBL;Acc:A0A178WJS2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.