Factsheet for GSMUA_Achr11P17620_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr2P18390_001	Banana	nucleus	52.98	60.49
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	11.93	51.55
GSMUA_Achr3P31130_001	Banana	mitochondrion, nucleus	34.37	41.14
GSMUA_Achr3P03090_001	Banana	nucleus	34.13	37.43
VIT_07s0005g02570.t01	Wine grape	nucleus	43.2	35.77
GSMUA_Achr5P16750_001	Banana	nucleus	40.33	34.77
GSMUA_Achr10P...	Banana	nucleus	41.53	34.12
GSMUA_Achr6P05880_001	Banana	nucleus	38.66	34.03
GSMUA_Achr6P07620_001	Banana	nucleus, plastid	39.62	34.02
GSMUA_Achr10P...	Banana	nucleus	39.38	33.27
GSMUA_Achr7P19340_001	Banana	nucleus	15.04	32.81
GSMUA_Achr10P...	Banana	nucleus	18.14	32.76
GSMUA_Achr2P15200_001	Banana	nucleus	40.81	32.14
GSMUA_Achr10P...	Banana	nucleus	28.88	32.1
Os05t0137500-00	Rice	nucleus	36.28	32.07
GSMUA_Achr1P05240_001	Banana	nucleus	24.82	31.9
KRG96611	Soybean	nucleus	39.14	31.78
GSMUA_Achr6P13630_001	Banana	nucleus	39.62	31.68
GSMUA_Achr7P08850_001	Banana	nucleus	29.12	31.44
GSMUA_Achr2P05100_001	Banana	nucleus	14.08	31.05
GSMUA_Achr11P...	Banana	nucleus	18.14	31.02
KRH68345	Soybean	endoplasmic reticulum, vacuole	39.62	30.68
KRH33656	Soybean	nucleus	35.32	30.64
KRH69145	Soybean	nucleus	35.32	30.58
GSMUA_Achr7P13400_001	Banana	nucleus	28.88	30.17
GSMUA_Achr7P16090_001	Banana	endoplasmic reticulum, nucleus, plastid	15.99	30.04
GSMUA_Achr5P16460_001	Banana	nucleus	16.71	29.79
GSMUA_Achr10P...	Banana	nucleus	20.05	29.17
EES00609	Sorghum	nucleus	40.33	29.04
Zm00001d040554_P001	Maize	nucleus	39.86	28.74
Zm00001d024768_P001	Maize	nucleus	37.47	28.7
Os01t0289600-00	Rice	nucleus, plastid	27.68	28.22
GSMUA_Achr7P05200_001	Banana	nucleus	18.85	28.21
Zm00001d008190_P001	Maize	nucleus	34.13	28.21
GSMUA_Achr3P13440_001	Banana	nucleus	18.14	27.64
GSMUA_Achr4P01930_001	Banana	extracellular, golgi	18.62	26.99
GSMUA_Achr6P02330_001	Banana	nucleus	22.91	26.02
GSMUA_Achr3P20290_001	Banana	nucleus	23.63	25.85
KXG21247	Sorghum	nucleus	34.13	25.22
GSMUA_Achr7P18820_001	Banana	nucleus	26.25	24.5
GSMUA_Achr1P10080_001	Banana	nucleus	19.33	24.18
GSMUA_Achr10P...	Banana	nucleus	25.3	22.13
GSMUA_Achr5P09730_001	Banana	nucleus	24.58	14.47

Protein Annotations

MapMan:15.5.22	Gene3D:2.20.25.80	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0043565	EnsemblPlantsGene:GSMUA_Achr11G17620_001	EnsemblPlants:GSMUA_Achr11P17620_001	EnsemblPlants:GSMUA_Achr11T17620_001	InterPro:IPR003657
InterPro:IPR036576	UniProt:M0RT42	PFAM:PF03106	PFscan:PS50811	PANTHER:PTHR31429	PANTHER:PTHR31429:SF30
SMART:SM00774	SUPFAM:SSF118290	UniParc:UPI000295D2A4	InterPro:WRKY_dom	InterPro:WRKY_dom_sf	SEG:seg

Description

Putative Probable WRKY transcription factor 42 [Source:GMGC_GENE;Acc:GSMUA_Achr11G17620_001]

Coordinates

chr11:+:19208083..19209970

Molecular Weight (calculated)

45372.6 Da

IEP (calculated)

7.744

GRAVY (calculated)

-0.516

Length

419 amino acids

Sequence
(BLAST)

001: MDRPVQETML LCLADDTEST NPIKEVDFFS QNRRQDVAEG RQGDAEDSPA HGATYVHTGL DLLTVNSQAS KEEKKPKNKL TTLRIELIRV RDENRRLRSM
101: MDQLTQSYTA LQCQLLQVMR QREHEIRHTQ VGKMCVSVPE GESSAHQFMQ PHPTRMWSIN GNSKDDDDDR EHSSSLNISS NDHSIIPSAE RVDVFSEGNN
201: GPMPMQESSC ADTSSDLPRR RARVSVRARS NARMIGDGCQ WRKYGQKMAK GNPCPRAYYR CTMAIGCPVR KQVQRCAEDK TLLVATYEGN HNHPLPPAAK
301: ALASTTSAAA AMLLSGSTGS GGFLQSAFPT VALDLTQSVN PLQQLPQAHP AALGLQRGAM VDTVTAAITT DPNFAAALAA AVTSIMGSAP ASAAGASSGP
401: HVVPGSPQLP KSCTTFSTN

Best Arabidopsis Sequence Match ( AT1G62300.1 )
(BLAST)

001: MDRGWSGLTL DSSSLDLLNP NRISHKNHRR FSNPLAMSRI DEEDDQKTRI STNGSEFRFP VSLSGIRDRE DEDFSSGVAG DNDREVPGEV DFFSDKKSRV
101: CREDDEGFRV KKEEQDDRTD VNTGLNLRTT GNTKSDESMI DDGESSEMED KRAKNELVKL QDELKKMTMD NQKLRELLTQ VSNSYTSLQM HLVSLMQQQQ
201: QQNNKVIEAA EKPEETIVPR QFIDLGPTRA VGEAEDVSNS SSEDRTRSGG SSAAERRSNG KRLGREESPE TESNKIQKVN STTPTTFDQT AEATMRKARV
301: SVRARSEAPM ISDGCQWRKY GQKMAKGNPC PRAYYRCTMA TGCPVRKQVQ RCAEDRSILI TTYEGNHNHP LPPAAVAMAS TTTAAANMLL SGSMSSHDGM
401: MNPTNLLARA VLPCSTSMAT ISASAPFPTV TLDLTHSPPP PNGSNPSSSA ATNNNHNSLM QRPQQQQQQM TNLPPGMLPH VIGQALYNQS KFSGLQFSGG
501: SPSTAAFSQS HAVADTITAL TADPNFTAAL AAVISSMING TNHHDGEGNN KNQ

Arabidopsis Description

WRKY6Uncharacterized protein At1g62300 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SV11]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.