CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, vacuole

Predictor Summary:

extracellular 5
endoplasmic reticulum 6
vacuole 6
plasma membrane 5
golgi 5
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, vacuole
Any Predictor:	nucleus, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG96611	Soybean	nucleus	83.18	87.21
KRH33656	Soybean	nucleus	49.91	55.9
KRH69145	Soybean	nucleus	49.72	55.58
VIT_07s0005g02570.t01	Wine grape	nucleus	50.28	53.75
KRG89544	Soybean	nucleus	13.49	44.79
GSMUA_Achr2P18390_001	Banana	nucleus	29.76	43.87
Os05t0137500-00	Rice	nucleus	37.52	42.83
GSMUA_Achr11P...	Banana	nucleus	30.68	39.62
Os01t0289600-00	Rice	nucleus, plastid	29.94	39.42
EES00609	Sorghum	nucleus	41.4	38.49
Zm00001d040554_P001	Maize	nucleus	40.48	37.69
KRH02033	Soybean	nucleus	33.27	36.81
KRH02502	Soybean	nucleus	26.43	36.57
KRH19450	Soybean	nucleus	25.88	36.55
Zm00001d008190_P001	Maize	nucleus	34.2	36.49
KRH36485	Soybean	nucleus	36.23	36.23
KRH51128	Soybean	nucleus, plastid	34.57	36.17
KRH11472	Soybean	nucleus	36.23	35.19
Zm00001d024768_P001	Maize	nucleus	35.49	35.1
KRH12664	Soybean	nucleus	26.99	32.37
KRH42243	Soybean	nucleus	10.72	32.04
KRG98705	Soybean	nucleus	28.1	31.8
KRH47344	Soybean	nucleus	18.11	31.51
KRH46231	Soybean	nucleus	28.28	31.48
KRH73787	Soybean	nucleus	24.4	31.43
KRH23643	Soybean	nucleus	17.74	31.07
KRH38314	Soybean	nucleus	13.86	30.99
KRH22585	Soybean	nucleus	35.12	30.94
KRH37650	Soybean	nucleus	26.06	30.79
KRG93506	Soybean	nucleus	27.36	30.2
KRH15674	Soybean	nucleus	15.71	30.14
KRH44560	Soybean	nucleus	17.38	30.03
KRH25355	Soybean	nucleus	34.01	29.97
KXG21247	Sorghum	nucleus	30.5	29.1
KRH56160	Soybean	nucleus	33.64	28.98
KRH09652	Soybean	nucleus	17.01	27.88
KRH05350	Soybean	nucleus	15.9	27.56
KRH61669	Soybean	nucleus	11.09	27.27
KRH61668	Soybean	nucleus	11.83	27.23
KRH63398	Soybean	nucleus	26.43	26.93
KRH05362	Soybean	nucleus	13.68	26.62
KRH33270	Soybean	nucleus	14.42	25.57
KRH15655	Soybean	nucleus	13.12	25.54
KRH40121	Soybean	nucleus	25.32	25.32
KRH56941	Soybean	nucleus	26.06	25.22
KRH54509	Soybean	nucleus	28.65	25.2
KRH01137	Soybean	nucleus	24.95	24.95
KRH03442	Soybean	nucleus	27.36	24.67
KRH58361	Soybean	nucleus	21.81	24.33
KRH74791	Soybean	nucleus	22.0	23.38
KRH69334	Soybean	nucleus	22.74	23.34
KRG99150	Soybean	nucleus	22.18	22.68
KRH52329	Soybean	nucleus	12.94	22.65
KRH54838	Soybean	cytosol, nucleus	9.8	22.55

Protein Annotations

EntrezGene:100817839	MapMan:15.5.22	Gene3D:2.20.25.80	EMBL:ACUP02002107	ncoils:Coil	EnsemblPlantsGene:GLYMA_03G224700
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	UniProt:I1JQX7
InterPro:IPR003657	InterPro:IPR036576	EnsemblPlants:KRH68345	ProteinID:KRH68345	ProteinID:KRH68345.1	PFAM:PF03106
PFscan:PS50811	PANTHER:PTHR31429	PANTHER:PTHR31429:SF30	SMART:SM00774	SUPFAM:SSF118290	SignalP:SignalP-noTM
UniParc:UPI0002339D72	InterPro:WRKY_dom	InterPro:WRKY_dom_sf	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr3:-:42698677..42702670

Molecular Weight (calculated)

58775.7 Da

IEP (calculated)

6.707

GRAVY (calculated)

-0.530

Length

541 amino acids

Sequence
(BLAST)

001: MPTLTIPIYF FFLFSLCISI SPNTYMDNRH HHREFTFLSS AHFLDHIDPP SIKEMDFFST SSPRDHKNNT SSRDTNDDHY QNRDDQHDTH DRHGSPTRVI
101: DHRVNTGLNL TCASAGVTKA ENGENPETEL SSLESELLRL QEENNKLRNV LDHITKSYTQ LQAQLFIALQ NLPQNMETKI VDPGTSRKLD VVNDASVSDE
201: KTDQDVSVSR SNNAEVMSKT HDHDDPQLTK LLNLGKQACP DAAEDVLDRS SSQSWGSSKL EEQPKTTAEQ LPADQIPLRK ARVSVRARSE APMISDGCQW
301: RKYGQKMAKG NPCPRAYYRC TMAVGCPVRK QVQRSADDKT VLITSYEGNH NHPLPPAATA MANTTSAAAA MLLSGSAASK ESLTNSAGYY SSTIPYASMA
401: TLSASAPFPT ITLDLTQNPN NAAMQLHRVP PGHGGATFPL PLHAAASGGP HLLGHPLFFQ QKLLPPQALM PLLQRQPSSM VETVSAAIAS DPNFTAALAA
501: AISSIIGVPR GGNDGNNNNS GSGAIPGSPQ LPQSCTTFST N

Best Arabidopsis Sequence Match ( AT1G62300.1 )
(BLAST)

001: MDRGWSGLTL DSSSLDLLNP NRISHKNHRR FSNPLAMSRI DEEDDQKTRI STNGSEFRFP VSLSGIRDRE DEDFSSGVAG DNDREVPGEV DFFSDKKSRV
101: CREDDEGFRV KKEEQDDRTD VNTGLNLRTT GNTKSDESMI DDGESSEMED KRAKNELVKL QDELKKMTMD NQKLRELLTQ VSNSYTSLQM HLVSLMQQQQ
201: QQNNKVIEAA EKPEETIVPR QFIDLGPTRA VGEAEDVSNS SSEDRTRSGG SSAAERRSNG KRLGREESPE TESNKIQKVN STTPTTFDQT AEATMRKARV
301: SVRARSEAPM ISDGCQWRKY GQKMAKGNPC PRAYYRCTMA TGCPVRKQVQ RCAEDRSILI TTYEGNHNHP LPPAAVAMAS TTTAAANMLL SGSMSSHDGM
401: MNPTNLLARA VLPCSTSMAT ISASAPFPTV TLDLTHSPPP PNGSNPSSSA ATNNNHNSLM QRPQQQQQQM TNLPPGMLPH VIGQALYNQS KFSGLQFSGG
501: SPSTAAFSQS HAVADTITAL TADPNFTAAL AAVISSMING TNHHDGEGNN KNQ

Arabidopsis Description

WRKY6Uncharacterized protein At1g62300 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SV11]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.