CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH39574
KRH74370
KRH74373

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G01720.1	KRH39574	AT1G32230.1	19548978
AT4G01720.1	KRH74370	AT1G32230.1	19548978
AT4G01720.1	KRH74373	AT1G32230.1	19548978

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH12664	Soybean	nucleus	87.34	88.69
KRH19450	Soybean	nucleus	48.47	57.96
KRH02502	Soybean	nucleus	48.47	56.78
KRG89544	Soybean	nucleus	14.63	41.1
KRH02033	Soybean	nucleus	32.75	30.67
KRG98705	Soybean	nucleus	30.79	29.5
KRH46231	Soybean	nucleus	30.79	29.01
Bra036315.1-P	Field mustard	nucleus	31.0	28.98
CDY22006	Canola	nucleus	31.0	28.98
CDY07121	Canola	nucleus	31.0	28.69
AT4G01720.1	Thale cress	nucleus	30.57	28.63
KRH38314	Soybean	nucleus	15.07	28.51
KRH36485	Soybean	nucleus	33.41	28.28
KRH73787	Soybean	nucleus	25.76	28.1
KRH51128	Soybean	nucleus, plastid	31.66	28.05
KRH11472	Soybean	nucleus	32.97	27.11
KRH42243	Soybean	nucleus	10.7	27.07
KRG96611	Soybean	nucleus	30.35	26.94
KRH33656	Soybean	nucleus	28.17	26.71
KRH68345	Soybean	endoplasmic reticulum, vacuole	30.79	26.06
KRH69145	Soybean	nucleus	27.51	26.03
KRH23643	Soybean	nucleus	17.47	25.89
KRH47344	Soybean	nucleus	17.47	25.72
KRG93506	Soybean	nucleus	27.51	25.71
KRH22585	Soybean	nucleus	33.84	25.24
KRH15674	Soybean	nucleus	15.5	25.18
KRH44560	Soybean	nucleus	17.03	24.92
KRH61669	Soybean	nucleus	11.79	24.55
KRH61668	Soybean	nucleus	12.45	24.26
KRH25355	Soybean	nucleus	31.22	23.29
KRH56160	Soybean	nucleus	31.66	23.09
KRH09652	Soybean	nucleus	16.59	23.03
KRH05350	Soybean	nucleus	15.07	22.12
KRH56941	Soybean	nucleus	26.64	21.82
KRH40121	Soybean	nucleus	25.76	21.81
KRH01137	Soybean	nucleus	25.55	21.63
KRH15655	Soybean	nucleus	12.88	21.22
KRH58361	Soybean	nucleus	22.27	21.03
KRH74791	Soybean	nucleus	23.36	21.02
KRH33270	Soybean	nucleus	13.97	20.98
KRH63398	Soybean	nucleus	24.24	20.9
KRH03442	Soybean	nucleus	27.07	20.67
KRH69334	Soybean	nucleus	23.36	20.3
KRH54838	Soybean	cytosol, nucleus	10.26	20.0
KRG99150	Soybean	nucleus	22.93	19.85
KRH05362	Soybean	nucleus	12.01	19.78
KRH52329	Soybean	nucleus	13.32	19.74
KRH54509	Soybean	nucleus	25.98	19.35

Protein Annotations

EntrezGene:100816719	MapMan:15.5.22	Gene3D:2.20.25.80	EMBL:ACUP02005480	ncoils:Coil	EnsemblPlantsGene:GLYMA_09G080000
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:IPR003657
InterPro:IPR036576	UniProt:K7LCG4	EnsemblPlants:KRH37650	ProteinID:KRH37650	ProteinID:KRH37650.1	PFAM:PF03106
PFscan:PS50811	PANTHER:PTHR31429	PANTHER:PTHR31429:SF24	SMART:SM00774	SUPFAM:SSF118290	UniParc:UPI0002337D11
InterPro:WRKY_dom	InterPro:WRKY_dom_sf	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr9:-:9165318..9172091

Molecular Weight (calculated)

50505.6 Da

IEP (calculated)

7.705

GRAVY (calculated)

-0.567

Length

458 amino acids

Sequence
(BLAST)

001: MEDKIVINEL LQDEEKPSSD NTMGSTLLSL SLNNSGQSLN QMGMLRIKLE EAKKENEILK AMLNQVNEHC TTLQNRILFE MQQHQLSASS SSPRNNNNHH
101: DSQGNKQDAE KPMLHTRQFL NIGESSILDG NTKACAIAEN VEKKILGKNL ASDINKYNVK GEINSQITLN EVKSTEDQAS EVTCRRARVS IRARSDFSLM
201: GDGCQWRKYG QKTAKGNPCP RAYYRCSMGT ACPVRKHVQR CFKDETILIT TYEGNHNHPL PPAARPLASS TSAALNMFLS GSITSSHCTT TLSNSPLFSS
301: SPSTISPSTA VATFSHNATC PTVTLDLTQP NNYLQFQRAT TSSQDRHTPS FFPLPLHGNP QNYSEDLMHL WYRVPLPTML APENKNLALV DVVSEAITKD
401: PSLKAALFSA ISSLTEDPDQ KNNINNQSQL SKSSGGYDPC SKVPAIIPPH QPCTTQLI

Best Arabidopsis Sequence Match ( AT1G62300.1 )
(BLAST)

001: MDRGWSGLTL DSSSLDLLNP NRISHKNHRR FSNPLAMSRI DEEDDQKTRI STNGSEFRFP VSLSGIRDRE DEDFSSGVAG DNDREVPGEV DFFSDKKSRV
101: CREDDEGFRV KKEEQDDRTD VNTGLNLRTT GNTKSDESMI DDGESSEMED KRAKNELVKL QDELKKMTMD NQKLRELLTQ VSNSYTSLQM HLVSLMQQQQ
201: QQNNKVIEAA EKPEETIVPR QFIDLGPTRA VGEAEDVSNS SSEDRTRSGG SSAAERRSNG KRLGREESPE TESNKIQKVN STTPTTFDQT AEATMRKARV
301: SVRARSEAPM ISDGCQWRKY GQKMAKGNPC PRAYYRCTMA TGCPVRKQVQ RCAEDRSILI TTYEGNHNHP LPPAAVAMAS TTTAAANMLL SGSMSSHDGM
401: MNPTNLLARA VLPCSTSMAT ISASAPFPTV TLDLTHSPPP PNGSNPSSSA ATNNNHNSLM QRPQQQQQQM TNLPPGMLPH VIGQALYNQS KFSGLQFSGG
501: SPSTAAFSQS HAVADTITAL TADPNFTAAL AAVISSMING TNHHDGEGNN KNQ

Arabidopsis Description

WRKY6Uncharacterized protein At1g62300 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SV11]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.