CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
Predotar:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH39574
KRH74370
KRH74373

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G01720.1	KRH39574	AT1G32230.1	19548978
AT4G01720.1	KRH74370	AT1G32230.1	19548978
AT4G01720.1	KRH74373	AT1G32230.1	19548978

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH19450	Soybean	nucleus	88.49	90.34
KRH12664	Soybean	nucleus	57.54	49.89
KRH37650	Soybean	nucleus	56.78	48.47
KRG89544	Soybean	nucleus	17.14	41.1
KRH02033	Soybean	nucleus	37.08	29.65
KRH46231	Soybean	nucleus	36.32	29.22
KRH33656	Soybean	nucleus	36.06	29.19
KRG98705	Soybean	nucleus	35.29	28.87
KRH69145	Soybean	nucleus	35.29	28.51
KRH51128	Soybean	nucleus, plastid	37.08	28.05
KRH73787	Soybean	nucleus	29.92	27.86
Bra036315.1-P	Field mustard	nucleus	34.78	27.76
CDY22006	Canola	nucleus	34.78	27.76
KRH47344	Soybean	nucleus	21.99	27.65
AT4G01720.1	Thale cress	nucleus	34.53	27.61
KRG96611	Soybean	nucleus	36.32	27.52
KRH23643	Soybean	nucleus	21.74	27.51
CDY07121	Canola	nucleus	34.78	27.47
KRH44560	Soybean	nucleus	21.74	27.16
KRH42243	Soybean	nucleus	12.53	27.07
KRH15674	Soybean	nucleus	19.44	26.95
KRH36485	Soybean	nucleus	36.83	26.62
KRH68345	Soybean	endoplasmic reticulum, vacuole	36.57	26.43
KRH61669	Soybean	nucleus	14.83	26.36
KRH61668	Soybean	nucleus	15.35	25.53
KRG93506	Soybean	nucleus	31.97	25.51
KRH11472	Soybean	nucleus	36.32	25.49
KRH38314	Soybean	nucleus	15.6	25.21
KRH09652	Soybean	nucleus	20.97	24.85
KRH22585	Soybean	nucleus	38.87	24.76
KRH05350	Soybean	nucleus	19.18	24.04
KRH25355	Soybean	nucleus	36.83	23.45
KRH56160	Soybean	nucleus	37.34	23.25
KRH15655	Soybean	nucleus	16.37	23.02
KRH63398	Soybean	nucleus	31.2	22.98
KRH56941	Soybean	nucleus	32.74	22.9
KRH03442	Soybean	nucleus	34.78	22.67
KRH40121	Soybean	nucleus	31.2	22.55
KRH01137	Soybean	nucleus	30.95	22.37
KRH05362	Soybean	nucleus	15.86	22.3
KRH33270	Soybean	nucleus	16.88	21.64
KRH58361	Soybean	nucleus	26.6	21.44
KRH54509	Soybean	nucleus	33.5	21.3
KRH52329	Soybean	nucleus	16.62	21.04
KRH54838	Soybean	cytosol, nucleus	12.53	20.85
KRH74791	Soybean	nucleus	27.11	20.83
KRG99150	Soybean	nucleus	27.62	20.42
KRH69334	Soybean	nucleus	26.6	19.73

Protein Annotations

EntrezGene:100779314	MapMan:15.5.22	Gene3D:2.20.25.80	EMBL:ACUP02010309	ncoils:Coil	EnsemblPlantsGene:GLYMA_17G042300
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	UniProt:I1MS01
InterPro:IPR003657	InterPro:IPR036576	EnsemblPlants:KRH02502	ProteinID:KRH02502	ProteinID:KRH02502.1	PFAM:PF03106
PFscan:PS50811	PANTHER:PTHR31429	SMART:SM00774	SUPFAM:SSF118290	UniParc:UPI0001BA58AD	InterPro:WRKY_dom
InterPro:WRKY_dom_sf	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr17:-:3134700..3139599

Molecular Weight (calculated)

43082.6 Da

IEP (calculated)

7.786

GRAVY (calculated)

-0.611

Length

391 amino acids

Sequence
(BLAST)

001: MEGKVALKKL LEVQKKAHVN STDALNWTEE PSIKNTLGST LLSLSLNNLE PPQNHEQQHL NQLGLLQIEL EEVKKENQNL RSMLNKISEH YAALQNQLLS
101: AMQQKKLSSS PRNNEDMQRD SRQEDMEKPV LSSCSQFLNT EGKFNKQVTT SQEAKTIEEQ AFEASCKKAR VSVRARSESS LMGDGCQWRK YGQKISKGNP
201: CPRAYYRCNM GTACPVRKQV QRCSEDESVV ITTYEGNHNH SLPPAAKSMA STTSAALKMF LSGSTSSSHG STYSYSNSDL FSPLFTSTYY PSASSSCPTI
301: NLDFTQTSKD NLKFPSVISS NHLQPFPLSL HGQPQQSEGI LPSEKNLALV DVVSAAITND PSLKAALEAA VSSIIGDSQN INNHSQSLPT F

Best Arabidopsis Sequence Match ( AT1G62300.1 )
(BLAST)

001: MDRGWSGLTL DSSSLDLLNP NRISHKNHRR FSNPLAMSRI DEEDDQKTRI STNGSEFRFP VSLSGIRDRE DEDFSSGVAG DNDREVPGEV DFFSDKKSRV
101: CREDDEGFRV KKEEQDDRTD VNTGLNLRTT GNTKSDESMI DDGESSEMED KRAKNELVKL QDELKKMTMD NQKLRELLTQ VSNSYTSLQM HLVSLMQQQQ
201: QQNNKVIEAA EKPEETIVPR QFIDLGPTRA VGEAEDVSNS SSEDRTRSGG SSAAERRSNG KRLGREESPE TESNKIQKVN STTPTTFDQT AEATMRKARV
301: SVRARSEAPM ISDGCQWRKY GQKMAKGNPC PRAYYRCTMA TGCPVRKQVQ RCAEDRSILI TTYEGNHNHP LPPAAVAMAS TTTAAANMLL SGSMSSHDGM
401: MNPTNLLARA VLPCSTSMAT ISASAPFPTV TLDLTHSPPP PNGSNPSSSA ATNNNHNSLM QRPQQQQQQM TNLPPGMLPH VIGQALYNQS KFSGLQFSGG
501: SPSTAAFSQS HAVADTITAL TADPNFTAAL AAVISSMING TNHHDGEGNN KNQ

Arabidopsis Description

WRKY6Uncharacterized protein At1g62300 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SV11]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.