CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 5
nucleus 5

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG94362
KRH03030
KRH05350
KRH07095
KRH09652
KRH15674
KRH23643
KRH44560
KRH47344
KRH52329
KRH52586
KRH55033
KRH61669
KRH61926
KRH63081
KRH72326

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G25000.1	KRH09652	AT1G80840.1	16603654
AT2G25000.1	KRH23643	AT1G80840.1	16603654
AT2G25000.1	KRH44560	AT1G80840.1	16603654
AT2G25000.1	KRH47344	AT1G80840.1	16603654
AT2G25000.1	KRH05350	AT2G25000.1	16603654
AT2G25000.1	KRH15674	AT2G25000.1	16603654
AT2G25000.1	KRH52329	AT2G25000.1	16603654
AT2G25000.1	KRH61669	AT2G25000.1	16603654
AT2G25000.1	KRH05350	AT2G25000.1	21798944
AT2G25000.1	KRH15674	AT2G25000.1	21798944
AT2G25000.1	KRH52329	AT2G25000.1	21798944
AT2G25000.1	KRH61669	AT2G25000.1	21798944
AT2G25000.1	KRG94362	AT3G27420.1	21798944
AT2G25000.1	KRH07095	AT3G27420.1	21798944
AT2G25000.1	KRH05350	AT4G31800.1	16603654
AT2G25000.1	KRH15674	AT4G31800.1	16603654
AT2G25000.1	KRH52329	AT4G31800.1	16603654
AT2G25000.1	KRH61669	AT4G31800.1	16603654
AT2G25000.1	KRH05350	AT4G31800.1	21798944
AT2G25000.1	KRH15674	AT4G31800.1	21798944
AT2G25000.1	KRH52329	AT4G31800.1	21798944
AT2G25000.1	KRH61669	AT4G31800.1	21798944
AT2G25000.1	KRH03030	AT5G57870.1	21798944
AT2G25000.1	KRH55033	AT5G57870.1	21798944
AT2G25000.1	KRH63081	AT5G57870.1	21798944
AT2G25000.1	KRH72326	AT5G57870.1	21798944
AT4G31800.1	KRH52586	AT1G71230.1	21798944
AT4G31800.1	KRH61926	AT1G71230.1	21798944
AT4G31800.1	KRH09652	AT1G80840.1	16603654
AT4G31800.1	KRH23643	AT1G80840.1	16603654
AT4G31800.1	KRH44560	AT1G80840.1	16603654
AT4G31800.1	KRH47344	AT1G80840.1	16603654
AT4G31800.1	KRH09652	AT1G80840.1	18776063
AT4G31800.1	KRH23643	AT1G80840.1	18776063
AT4G31800.1	KRH44560	AT1G80840.1	18776063
AT4G31800.1	KRH47344	AT1G80840.1	18776063
AT4G31800.1	KRH09652	AT1G80840.1	21798944
AT4G31800.1	KRH23643	AT1G80840.1	21798944
AT4G31800.1	KRH44560	AT1G80840.1	21798944
AT4G31800.1	KRH47344	AT1G80840.1	21798944
AT4G31800.1	KRH05350	AT2G25000.1	16603654
AT4G31800.1	KRH15674	AT2G25000.1	16603654
AT4G31800.1	KRH52329	AT2G25000.1	16603654
AT4G31800.1	KRH61669	AT2G25000.1	16603654
AT4G31800.1	KRH05350	AT4G31800.1	16603654
AT4G31800.1	KRH15674	AT4G31800.1	16603654
AT4G31800.1	KRH52329	AT4G31800.1	16603654
AT4G31800.1	KRH61669	AT4G31800.1	16603654
AT4G31800.1	KRH05350	AT4G31800.1	21798944
AT4G31800.1	KRH15674	AT4G31800.1	21798944
AT4G31800.1	KRH52329	AT4G31800.1	21798944
AT4G31800.1	KRH61669	AT4G31800.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH52329	Soybean	nucleus	78.18	55.66
KRH15674	Soybean	nucleus	58.18	45.39
KRH05350	Soybean	nucleus	58.18	41.03
GSMUA_Achr7P19340_001	Banana	nucleus	35.0	40.1
GSMUA_Achr2P05100_001	Banana	nucleus	31.82	36.84
PGSC0003DMT400019061	Potato	nucleus	42.27	36.76
Solyc08g067340.2.1	Tomato	nucleus	41.82	36.36
KRH47344	Soybean	nucleus	50.45	35.69
Solyc08g067360.2.1	Tomato	nucleus	41.82	35.66
PGSC0003DMT400019058	Potato	nucleus	42.27	35.63
CDX72327	Canola	nucleus	45.91	35.44
VIT_04s0008g05760.t01	Wine grape	nucleus	50.45	35.02
KRH23643	Soybean	nucleus	49.09	34.95
KRH44560	Soybean	nucleus	49.55	34.82
GSMUA_Achr3P13440_001	Banana	nucleus	43.18	34.55
Bra019123.1-P	Field mustard	nucleus	30.45	34.54
GSMUA_Achr11P...	Banana	nucleus	38.18	34.29
GSMUA_Achr10P...	Banana	nucleus	35.91	34.05
KRH09652	Soybean	nucleus	50.91	33.94
CDX75196	Canola	nucleus	43.64	33.92
GSMUA_Achr5P16460_001	Banana	nucleus	35.91	33.62
CDY39879	Canola	nucleus	46.36	33.22
AT4G31800.1	Thale cress	nucleus	46.36	32.9
GSMUA_Achr10P...	Banana	nucleus	42.73	32.64
GSMUA_Achr7P05200_001	Banana	nucleus	41.36	32.5
Bra011299.1-P	Field mustard	nucleus	46.82	32.49
Bra010220.1-P	Field mustard	nucleus	45.0	32.14
CDX68787	Canola	nucleus	46.36	31.97
AT2G25000.1	Thale cress	nucleus	37.73	30.63
Zm00001d053746_P001	Maize	nucleus	43.64	29.91
GSMUA_Achr4P01930_001	Banana	extracellular, golgi	38.64	29.41
TraesCS7B01G418600.1	Wheat	nucleus	38.64	29.41
KRH61668	Soybean	nucleus	31.36	29.36
HORVU5Hr1G065380.2	Barley	nucleus	23.18	29.31
Bra023983.1-P	Field mustard	nucleus	45.45	28.99
CDY70096	Canola	nucleus	45.45	28.99
TraesCS7A01G508800.1	Wheat	nucleus	41.36	27.83
TraesCS7D01G497400.1	Wheat	nucleus	41.36	27.83
GSMUA_Achr7P16090_001	Banana	endoplasmic reticulum, nucleus, plastid	28.18	27.8
TraesCS7B01G418400.1	Wheat	nucleus	40.91	27.61
Os06t0649000-01	Rice	nucleus	42.27	27.6
HORVU7Hr1G113830.1	Barley	nucleus	40.0	27.59
Os02t0181300-01	Rice	nucleus	43.64	27.59
TraesCS7B01G418500.2	Wheat	nucleus	40.91	27.36
TraesCS7A01G508700.1	Wheat	nucleus	40.0	27.16
TraesCS6A01G146900.1	Wheat	nucleus	43.18	27.14
Zm00001d015515_P001	Maize	nucleus	42.73	27.09
TraesCS6D01G136200.1	Wheat	nucleus	42.73	27.01
EES04642	Sorghum	nucleus	44.55	26.92
HORVU6Hr1G028790.1	Barley	nucleus	43.18	26.91
TraesCS7D01G497700.1	Wheat	nucleus	40.0	26.83
Zm00001d020492_P001	Maize	nucleus	36.82	26.82
TraesCS7B01G419400.1	Wheat	nucleus	39.09	26.71
GSMUA_Achr1P10080_001	Banana	nucleus	40.45	26.57
TraesCS7D01G497800.1	Wheat	nucleus	39.09	26.38
EER90124	Sorghum	nucleus	40.91	26.32
Zm00001d020495_P001	Maize	nucleus	31.82	26.32
Zm00001d046805_P001	Maize	nucleus	41.82	26.21
TraesCS5D01G232700.1	Wheat	nucleus	32.27	26.2
Zm00001d036726_P001	Maize	nucleus	40.91	26.16
TraesCS6B01G175100.2	Wheat	nucleus	41.82	25.92
TraesCS5A01G225500.1	Wheat	nucleus	31.82	25.83
EER88729	Sorghum	nucleus	40.45	25.57
KXG35639	Sorghum	nucleus	33.64	25.08
KRH15655	Soybean	nucleus	31.36	24.82
Os09t0417600-02	Rice	nucleus	36.82	24.77
EER98905	Sorghum	nucleus, plastid	36.36	24.46
TraesCS7A01G509000.1	Wheat	nucleus	38.64	24.43
TraesCS5A01G225600.1	Wheat	nucleus	36.36	24.17
TraesCS5B01G224000.1	Wheat	nucleus	36.36	24.17
TraesCS7D01G497300.1	Wheat	plastid	40.45	23.92
TraesCS5D01G232800.1	Wheat	nucleus	35.91	23.87
KRH54838	Soybean	cytosol, nucleus	25.45	23.83
KRH05362	Soybean	nucleus	29.55	23.38
TraesCS5B01G224100.1	Wheat	nucleus	35.0	23.33
Os09t0417800-01	Rice	nucleus	33.18	22.96
HORVU7Hr1G113850.4	Barley	nucleus, plastid	41.82	22.66
TraesCS5D01G232900.1	Wheat	nucleus	36.36	21.56
HORVU5Hr1G065420.15	Barley	nucleus	38.18	21.48
KRG89544	Soybean	nucleus	15.91	21.47
Zm00001d005749_P001	Maize	nucleus	34.09	21.37
KRH42243	Soybean	nucleus	15.91	19.34
KRH38314	Soybean	nucleus	20.91	19.01
KRH19450	Soybean	nucleus	25.91	14.88
KRH02502	Soybean	nucleus	26.36	14.83
KRH46231	Soybean	nucleus	31.36	14.2
KRH02033	Soybean	nucleus	29.55	13.29
KRH51128	Soybean	nucleus, plastid	30.91	13.15
KRG98705	Soybean	nucleus	28.18	12.97
KRH73787	Soybean	nucleus	24.55	12.86
KRH36485	Soybean	nucleus	31.36	12.75
KRH12664	Soybean	nucleus	25.45	12.42
KRH11472	Soybean	nucleus	31.36	12.39
KRG93506	Soybean	nucleus	27.27	12.24
KRH33656	Soybean	nucleus	26.82	12.22
KRH69145	Soybean	nucleus	26.82	12.19
KRH37650	Soybean	nucleus	24.55	11.79
KRH25355	Soybean	nucleus	31.36	11.24
KRH56160	Soybean	nucleus	31.82	11.15
KRH68345	Soybean	endoplasmic reticulum, vacuole	27.27	11.09
KRH22585	Soybean	nucleus	30.91	11.07
KRG96611	Soybean	nucleus	25.91	11.05
KRH74791	Soybean	nucleus	25.45	11.0
KRH63398	Soybean	nucleus	26.36	10.92
KRG99150	Soybean	nucleus	25.45	10.59
KRH58361	Soybean	nucleus	23.18	10.52
KRH69334	Soybean	nucleus	25.0	10.44
KRH01137	Soybean	nucleus	25.45	10.35
KRH40121	Soybean	nucleus	25.45	10.35
KRH56941	Soybean	nucleus	25.91	10.2
KRH03442	Soybean	nucleus	27.27	10.0
KRH54509	Soybean	nucleus	26.82	9.59
KRH33270	Soybean	nucleus	12.27	8.85

Protein Annotations

MapMan:15.5.22	Gene3D:2.20.25.80	EMBL:ACUP02002180	ncoils:Coil	EnsemblPlantsGene:GLYMA_04G061400	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:IPR003657	InterPro:IPR036576
UniProt:K7KIE6	EnsemblPlants:KRH61669	ProteinID:KRH61669	ProteinID:KRH61669.1	PFAM:PF03106	PFscan:PS50811
PANTHER:PTHR31429	PANTHER:PTHR31429:SF39	SMART:SM00774	SUPFAM:SSF118290	UniParc:UPI00029608A8	InterPro:WRKY_dom
InterPro:WRKY_dom_sf	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr4:-:5000479..5002170

Molecular Weight (calculated)

24927.3 Da

IEP (calculated)

8.364

GRAVY (calculated)

-0.711

Length

220 amino acids

Sequence
(BLAST)

001: MASTNHNSSF SHSFCPLIAK QTLISSMGME PTCVDTSLNL NVIPSPHIAE EVLVEELRRL SNENKRLTET LKHVCENYVA LQKHLNEFSQ LRNANFDKEA
101: GTVPSLKRKA ESVNLFGINN YTECSTITEE ETFKRPKHST EPKVSKVLTR TDASDTGLYV RDGYQWRKYG QKVTRDNPSP RAYFKCSYAP SCPVKKKVQR
201: SVEDPSVLVT TYEGEHNHGQ

Best Arabidopsis Sequence Match ( AT1G80840.1 )
(BLAST)

001: MDQYSSSLVD TSLDLTIGVT RMRVEEDPPT SALVEELNRV SAENKKLSEM LTLMCDNYNV LRKQLMEYVN KSNITERDQI SPPKKRKSPA REDAFSCAVI
101: GGVSESSSTD QDEYLCKKQR EETVVKEKVS RVYYKTEASD TTLVVKDGYQ WRKYGQKVTR DNPSPRAYFK CACAPSCSVK KKVQRSVEDQ SVLVATYEGE
201: HNHPMPSQID SNNGLNRHIS HGGSASTPVA ANRRSSLTVP VTTVDMIESK KVTSPTSRID FPQVQKLLVE QMASSLTKDP NFTAALAAAV TGKLYQQNHT
301: EK

Arabidopsis Description

WRKY40Probable WRKY transcription factor 40 [Source:UniProtKB/Swiss-Prot;Acc:Q9SAH7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.