Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
KRG94362 | Soybean | extracellular | 83.7 | 83.18 |
VIT_14s0066g00150.t01 | Wine grape | nucleus | 46.71 | 40.6 |
Solyc02g067900.2.1 | Tomato | cytosol | 40.75 | 39.63 |
GSMUA_Achr6P22990_001 | Banana | cytosol | 15.99 | 38.64 |
PGSC0003DMT400017933 | Potato | cytosol | 40.13 | 38.44 |
HORVU3Hr1G092230.1 | Barley | cytosol | 9.09 | 36.25 |
AT3G27420.1 | Thale cress | nucleus | 25.71 | 33.61 |
CDY03968 | Canola | nucleus | 24.45 | 33.05 |
TraesCS3D01G408700.2 | Wheat | nucleus | 26.02 | 29.64 |
CDY42568 | Canola | plastid | 24.45 | 29.21 |
CDY36364 | Canola | mitochondrion | 24.45 | 28.26 |
TraesCS3A01G414200.1 | Wheat | nucleus | 20.69 | 25.19 |
AT5G40600.1 | Thale cress | endoplasmic reticulum | 25.08 | 24.62 |
TraesCS3B01G449000.1 | Wheat | cytosol | 22.88 | 24.58 |
KXG33957 | Sorghum | nucleus | 20.38 | 23.9 |
Bra033010.1-P | Field mustard | cytosol | 22.88 | 14.84 |
CDY34147 | Canola | cytosol | 23.51 | 14.07 |
Protein Annotations
Gene3D:1.20.1270.220 | EntrezGene:100790673 | MapMan:35.2 | UniProt:A0A0R0FMA3 | EMBL:ACUP02009931 | EnsemblPlantsGene:GLYMA_16G067800 |
GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 |
GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:GTE1/GTE6 | InterPro:IPR027353 |
InterPro:IPR038336 | ProteinID:KRH07094.1 | EnsemblPlants:KRH07095 | ProteinID:KRH07095 | ProteinID:KRH07095.1 | InterPro:NET_dom |
InterPro:NET_sf | PFAM:PF17035 | PFscan:PS51525 | PANTHER:PTHR22880 | PANTHER:PTHR22880:SF163 | UniParc:UPI0003DE93FD |
SEG:seg | : | : | : | : | : |
Description
hypothetical protein
Coordinates
chr16:+:6715004..6726045
Molecular Weight (calculated)
36183.5 Da
IEP (calculated)
4.568
GRAVY (calculated)
-0.538
Length
319 amino acids
Sequence
(BLAST)
(BLAST)
001: MSNASKSFVA SDKYERVGPD YFGYYSSEVV NLLSQDEDVF PVSTQTPELP ESKYEEGRKK NLVNQSDNCS GPLYSNAVGA CLSDFKKDRL KSLLRQSVIA
101: LSSEVDQVVD PVFAAYHLQA NLKSKSQSLN DTATASDNVV QVPCKKLKMS SSSSSDRFLE QATNVNPQCS RKDPKSHYFL GLPQSEYLSK EKTTDDIQFL
201: LENDNVEVAE MVTEYANDLS GTLGYMEEQL ELLLDTIMFK CRSMTLAEKQ RLQSLIQKLP ARNLDRVVEL IWRNRPIEEQ NCDKIFVDLE KEDDATLWRL
301: YYYIEAVEKA KSLSCSQEA
101: LSSEVDQVVD PVFAAYHLQA NLKSKSQSLN DTATASDNVV QVPCKKLKMS SSSSSDRFLE QATNVNPQCS RKDPKSHYFL GLPQSEYLSK EKTTDDIQFL
201: LENDNVEVAE MVTEYANDLS GTLGYMEEQL ELLLDTIMFK CRSMTLAEKQ RLQSLIQKLP ARNLDRVVEL IWRNRPIEEQ NCDKIFVDLE KEDDATLWRL
301: YYYIEAVEKA KSLSCSQEA
001: MSKRAAEEMT PSLESNRTGP DFFGYYRAQV EELLSQEEKI PHHNHVDAKK SSAEIIGAEL SDVKQEKLNA LLRQCVLNSI PEVDEMQSRV DSMYLMSQLS
101: NKKRSTLPTN AESVIPEDPR CKEVEDDLRL LMKSDPSLVK EIVGKHSSDL LARLNERQQH LEKLLDNVVT TCRPMSRGEK RDLQKSIKEL PAKNLERVAG
201: IIKNHYVALG KEMPDDVFVI NMEEEDKVLL WRLHYFVVAV QSARKLAS
101: NKKRSTLPTN AESVIPEDPR CKEVEDDLRL LMKSDPSLVK EIVGKHSSDL LARLNERQQH LEKLLDNVVT TCRPMSRGEK RDLQKSIKEL PAKNLERVAG
201: IIKNHYVALG KEMPDDVFVI NMEEEDKVLL WRLHYFVVAV QSARKLAS
Arabidopsis Description
unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G27420.1); Has 18 /.../st hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). [Source:TAIR;Acc:AT5G40600]
SUBAcon: [mitochondrion,nucleus,cytosol]
SUBAcon: [mitochondrion,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.