Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY03968 | Canola | nucleus | 55.33 | 57.2 |
| AT5G40600.1 | Thale cress | endoplasmic reticulum | 48.36 | 36.31 |
| HORVU3Hr1G092230.1 | Barley | cytosol | 11.07 | 33.75 |
| GSMUA_Achr6P22990_001 | Banana | cytosol | 17.62 | 32.58 |
| KRG94362 | Soybean | extracellular | 35.66 | 27.1 |
| Bra033010.1-P | Field mustard | cytosol | 53.28 | 26.42 |
| KRH07095 | Soybean | nucleus | 33.61 | 25.71 |
| CDY34147 | Canola | cytosol | 54.92 | 25.14 |
| Solyc02g067900.2.1 | Tomato | cytosol | 32.79 | 24.39 |
| PGSC0003DMT400017933 | Potato | cytosol | 31.56 | 23.12 |
| TraesCS3A01G414200.1 | Wheat | nucleus | 24.59 | 22.9 |
| VIT_14s0066g00150.t01 | Wine grape | nucleus | 34.43 | 22.89 |
| TraesCS3D01G408700.2 | Wheat | nucleus | 25.82 | 22.5 |
| TraesCS3B01G449000.1 | Wheat | cytosol | 25.41 | 20.88 |
| KXG33957 | Sorghum | nucleus | 21.72 | 19.49 |
Protein Annotations
| Gene3D:1.20.1270.220 | MapMan:35.2 | EntrezGene:822363 | ProteinID:AEE77316.1 | ArrayExpress:AT3G27420 | EnsemblPlantsGene:AT3G27420 |
| RefSeq:AT3G27420 | TAIR:AT3G27420 | RefSeq:AT3G27420-TAIR-G | EnsemblPlants:AT3G27420.1 | TAIR:AT3G27420.1 | EMBL:AY072433 |
| EMBL:BT002171 | ncoils:Coil | GO:GO:0003674 | GO:GO:0008150 | InterPro:IPR027353 | InterPro:IPR038336 |
| InterPro:NET_dom | InterPro:NET_sf | RefSeq:NP_566817.1 | PFAM:PF17035 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PFscan:PS51525 |
| UniProt:Q8VY55 | UniParc:UPI00000AC3FB | : | : | : | : |
Description
Bromodomain testis-specific protein [Source:UniProtKB/TrEMBL;Acc:Q8VY55]
Coordinates
chr3:+:10148555..10150420
Molecular Weight (calculated)
27544.6 Da
IEP (calculated)
5.433
GRAVY (calculated)
-0.577
Length
244 amino acids
Sequence
(BLAST)
(BLAST)
001: MPKRTAEACP SSEIQRSRGD TFGSYRSQVA ELLSLGERIS HHDQQEANER HSESVIGAGM SNVEKDNLNV LLRQCVRNLS PEVDEMQECV RSLYLISQLG
101: NKCQSSSPSD FVPEETGGAR EDDIQLLLRS DSDMVKNITS QYSNVLLSKL DNMQQELERL LDDVVATCRP MTRGEIRELQ KSIKELPERN LNRVAEIVGN
201: HCIASGRDFN DKVIVNLDQA DKVMLWRLHF YVGAVKRPRS SLPS
101: NKCQSSSPSD FVPEETGGAR EDDIQLLLRS DSDMVKNITS QYSNVLLSKL DNMQQELERL LDDVVATCRP MTRGEIRELQ KSIKELPERN LNRVAEIVGN
201: HCIASGRDFN DKVIVNLDQA DKVMLWRLHF YVGAVKRPRS SLPS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.