CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 1
extracellular 4
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	extracellular
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG92823
KRG95612
KRG97923
KRH03947
KRH05183
KRH15121
KRH15859
KRH30960
KRH32094
KRH33973
KRH52586
KRH55381
KRH57220
KRH61926
KRH67287
KRH73015

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G27420.1	KRG97923	AT1G66470.1	21798944
AT3G27420.1	KRH15121	AT1G66470.1	21798944
AT3G27420.1	KRH30960	AT1G66470.1	21798944
AT3G27420.1	KRH73015	AT1G66470.1	21798944
AT3G27420.1	KRH52586	AT1G71230.1	21798944
AT3G27420.1	KRH61926	AT1G71230.1	21798944
AT3G27420.1	KRG92823	AT3G05210.1	21798944
AT3G27420.1	KRH33973	AT3G05210.1	21798944
AT3G27420.1	KRG95612	AT4G02590.1	21798944
AT3G27420.1	KRH32094	AT4G02590.1	21798944
AT3G27420.1	KRH55381	AT4G02590.1	21798944
AT3G27420.1	KRH67287	AT4G02590.1	21798944
AT3G27420.1	KRH03947	AT4G24840.1	21798944
AT3G27420.1	KRH57220	AT4G24840.1	21798944
AT3G27420.1	KRH05183	AT4G32190.1	21798944
AT3G27420.1	KRH15859	AT4G32190.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH07095	Soybean	nucleus	83.18	83.7
GSMUA_Achr6P22990_001	Banana	cytosol	17.45	42.42
Solyc02g067900.2.1	Tomato	cytosol	40.81	39.94
VIT_14s0066g00150.t01	Wine grape	nucleus	44.55	38.96
PGSC0003DMT400017933	Potato	cytosol	40.19	38.74
HORVU3Hr1G092230.1	Barley	cytosol	9.03	36.25
AT3G27420.1	Thale cress	nucleus	27.1	35.66
CDY03968	Canola	nucleus	25.23	34.32
CDY42568	Canola	plastid	26.17	31.46
TraesCS3D01G408700.2	Wheat	nucleus	26.79	30.71
CDY36364	Canola	mitochondrion	25.86	30.07
TraesCS3A01G414200.1	Wheat	nucleus	21.81	26.72
AT5G40600.1	Thale cress	endoplasmic reticulum	26.17	25.85
KXG33957	Sorghum	nucleus	21.81	25.74
TraesCS3B01G449000.1	Wheat	cytosol	23.68	25.59
Bra033010.1-P	Field mustard	cytosol	24.3	15.85
CDY34147	Canola	cytosol	24.92	15.01

Protein Annotations

Gene3D:1.20.1270.220	MapMan:35.2	UniProt:A0A0R0EVJ9	EMBL:ACUP02011939	EnsemblPlantsGene:GLYMA_19G079100	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:GTE1/GTE6	InterPro:IPR027353	InterPro:IPR038336
EnsemblPlants:KRG94362	ProteinID:KRG94362	ProteinID:KRG94362.1	InterPro:NET_dom	InterPro:NET_sf	PFAM:PF17035
PFscan:PS51525	PANTHER:PTHR22880	PANTHER:PTHR22880:SF163	UniParc:UPI0006EE017B	SEG:seg	:

Description

hypothetical protein

Coordinates

chr19:-:28415295..28425075

Molecular Weight (calculated)

36131.8 Da

IEP (calculated)

4.706

GRAVY (calculated)

-0.366

Length

321 amino acids

Sequence
(BLAST)

001: MAFDSFFVVN VVDTCCASLF SVMSNVSKSS FASDKYERVG PDYFGYYSSE VVNLLSQDED VFPVSTQTPE LPETKYEEGG KKNLVNQTDN CSGPLYSNAV
101: GAGLSEFKKD RFKSLLRQSV IALSSEVDEV VDPVFAAYHL QSKLKSKSQS LNDTATASDN VMQVPCKKLK ISSSSTSARF LERTTNVNPQ CSRKTTDDVQ
201: FLLEKDSVEV AEMVTKYSND LSRTLGYMEE QLELLLDTIM LKCRPMTLAE KQKLQNLIQK LPARNLDRVV ELICRNRPIE EQNCDKVFVD LEKEDDATLW
301: RLYYYVEAVE KAKSLSCSQA A

Best Arabidopsis Sequence Match ( AT5G40600.4 )
(BLAST)

001: MTIPVPLESL FPLLHRSVNC SFLPGGAILI SGDFSDFIVA MSKRAAEEMT PSLESNRTGP DFFGYYRAQV EELLSQEEKI PHHNHVDAKK SSAEIIGAEL
101: SDVKQEKLNA LLRQCVLNSI PEVDEMQSRV DSMYLMSQLS NKKRSTLPTN AESVIPEDPR CKEVEDDLRL LMKSDPSLVK EIVGKHSSDL LARLNERQQH
201: LEKLLDNVVT TCRPMSRGEK RDLQKSIKEL PAKNLERVAG IIKNHYVALG KEMPDDVFVI NMEEEDKVLL WRLHYFVVAV QSARKLAS

Arabidopsis Description

unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G27420.1); Has 18 /.../st hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). [Source:TAIR;Acc:AT5G40600]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.