CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 5
cytosol 1
extracellular 1
endoplasmic reticulum 2
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	secretory
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY36364	Canola	mitochondrion	94.76	91.67
CDY03968	Canola	nucleus	43.45	49.15
AT5G40600.1	Thale cress	endoplasmic reticulum	56.55	46.46
GSMUA_Achr6P22990_001	Banana	cytosol	17.23	34.85
HORVU3Hr1G092230.1	Barley	cytosol	9.74	32.5
VIT_14s0066g00150.t01	Wine grape	nucleus	38.2	27.79
KRG94362	Soybean	extracellular	31.46	26.17
KRH07095	Soybean	nucleus	29.21	24.45
TraesCS3D01G408700.2	Wheat	nucleus	24.72	23.57
Solyc02g067900.2.1	Tomato	cytosol	28.84	23.48
PGSC0003DMT400017933	Potato	cytosol	28.09	22.52
CDY34147	Canola	cytosol	44.19	22.14
TraesCS3A01G414200.1	Wheat	nucleus	21.72	22.14
KXG33957	Sorghum	nucleus	22.47	22.06
TraesCS3B01G449000.1	Wheat	cytosol	22.47	20.2

Protein Annotations

EnsemblPlants:CDY42568	EnsemblPlantsGene:GSBRNA2T00075060001	Gene3D:1.20.1270.220	InterPro:IPR027353	InterPro:IPR038336	InterPro:NET_dom
InterPro:NET_sf	PANTHER:PTHR22880	PANTHER:PTHR22880:SF180	PFAM:PF17035	PFscan:PS51525	ProteinID:CDY42568
ProteinID:CDY42568.1	UniParc:UPI0004EF0347	UniProt:A0A078I0J0	MapMan:35.2	:	:

Description

BnaA04g10450DBnaA04g10450D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I0J0]

Coordinates

chrLK032529:+:131400..135006

Molecular Weight (calculated)

29746.6 Da

IEP (calculated)

6.685

GRAVY (calculated)

-0.470

Length

267 amino acids

Sequence
(BLAST)

001: MTVIGFLFSP VAIAPLRFQS PATPLSDSTL TMTKRAAEEA PPSTDSSTTG PNFLGCYRDQ VAELLSQEER IPHHEDGDTK KPSTEIIGAG ISSLKREKLK
101: ALLRQCVTDL IPGVDEMQSR ARSMLLMSQL SNKKPSISVT NEEVEDDIQL LLKSDPRLFK EIVKKHTDDV LTSLNNMQQQ AEKLLDNVAT SCRPMSRDEK
201: RDLQRSIKEL PGGNLKRIAE IIKDHRAASG KAFSDEVTVN LEEEDNTMLW RLHFYVAAVK SARKLAS

Best Arabidopsis Sequence Match ( AT5G40600.4 )
(BLAST)

001: MTIPVPLESL FPLLHRSVNC SFLPGGAILI SGDFSDFIVA MSKRAAEEMT PSLESNRTGP DFFGYYRAQV EELLSQEEKI PHHNHVDAKK SSAEIIGAEL
101: SDVKQEKLNA LLRQCVLNSI PEVDEMQSRV DSMYLMSQLS NKKRSTLPTN AESVIPEDPR CKEVEDDLRL LMKSDPSLVK EIVGKHSSDL LARLNERQQH
201: LEKLLDNVVT TCRPMSRGEK RDLQKSIKEL PAKNLERVAG IIKNHYVALG KEMPDDVFVI NMEEEDKVLL WRLHYFVVAV QSARKLAS

Arabidopsis Description

unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G27420.1); Has 18 /.../st hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). [Source:TAIR;Acc:AT5G40600]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.