Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU3Hr1G092230.1 | Barley | cytosol | 13.24 | 45.0 |
| GSMUA_Achr6P22990_001 | Banana | cytosol | 18.38 | 37.88 |
| TraesCS3A01G414200.1 | Wheat | nucleus | 34.19 | 35.5 |
| TraesCS3D01G408700.2 | Wheat | nucleus | 36.4 | 35.36 |
| TraesCS3B01G449000.1 | Wheat | cytosol | 34.93 | 31.99 |
| CDY42568 | Canola | plastid | 22.06 | 22.47 |
| CDY36364 | Canola | mitochondrion | 22.43 | 22.1 |
| KRG94362 | Soybean | extracellular | 25.74 | 21.81 |
| AT3G27420.1 | Thale cress | nucleus | 19.49 | 21.72 |
| KRH07095 | Soybean | nucleus | 23.9 | 20.38 |
| VIT_14s0066g00150.t01 | Wine grape | nucleus | 26.84 | 19.89 |
| CDY03968 | Canola | nucleus | 16.18 | 18.64 |
| AT5G40600.1 | Thale cress | endoplasmic reticulum | 20.59 | 17.23 |
| PGSC0003DMT400017933 | Potato | cytosol | 20.22 | 16.52 |
| Solyc02g067900.2.1 | Tomato | cytosol | 19.49 | 16.16 |
| Bra033010.1-P | Field mustard | cytosol | 18.01 | 9.96 |
| CDY34147 | Canola | cytosol | 17.65 | 9.01 |
Protein Annotations
| EnsemblPlants:KXG33957 | EnsemblPlantsGene:SORBI_3003G395700 | Gene3D:1.20.1270.220 | InterPro:IPR027353 | InterPro:IPR038336 | InterPro:NET_dom |
| InterPro:NET_sf | PFAM:PF17035 | PFscan:PS51525 | ProteinID:KXG33957 | ProteinID:KXG33957.1 | SEG:seg |
| UniParc:UPI00081AD90C | UniProt:A0A1B6Q7T0 | MapMan:35.2 | : | : | : |
Description
hypothetical protein
Coordinates
chr3:+:70606012..70615296
Molecular Weight (calculated)
30673.8 Da
IEP (calculated)
7.914
GRAVY (calculated)
-0.748
Length
272 amino acids
Sequence
(BLAST)
(BLAST)
001: MKRGAPPPDP STAIRTHEAA RDEGQSTPRL RDLDGGRRER TRDLEIDGSE MPSRLHYRKM SRKSFEGNDS NVNRLEHYKN VLTKLLLGKG DFFCKGVSNE
101: AQGTSLQSIE GHVCNRALPL FAEQISGLSK NDKEGIKYTL HEIITILNDD LDEIDRDIHG MQECGETCQE DMKKLSAGLL GKLGKMAQGV DDLLNTAASK
201: CRPMSKEEKI ELGKRIRKLP EEALNRVVEI ITGRKLASQK SDKITMKLGE LDDATLWRLY NHVEYVLKEN KI
101: AQGTSLQSIE GHVCNRALPL FAEQISGLSK NDKEGIKYTL HEIITILNDD LDEIDRDIHG MQECGETCQE DMKKLSAGLL GKLGKMAQGV DDLLNTAASK
201: CRPMSKEEKI ELGKRIRKLP EEALNRVVEI ITGRKLASQK SDKITMKLGE LDDATLWRLY NHVEYVLKEN KI
001: MPKRTAEACP SSEIQRSRGD TFGSYRSQVA ELLSLGERIS HHDQQEANER HSESVIGAGM SNVEKDNLNV LLRQCVRNLS PEVDEMQECV RSLYLISQLG
101: NKCQSSSPSD FVPEETGGAR EDDIQLLLRS DSDMVKNITS QYSNVLLSKL DNMQQELERL LDDVVATCRP MTRGEIRELQ KSIKELPERN LNRVAEIVGN
201: HCIASGRDFN DKVIVNLDQA DKVMLWRLHF YVGAVKRPRS SLPS
101: NKCQSSSPSD FVPEETGGAR EDDIQLLLRS DSDMVKNITS QYSNVLLSKL DNMQQELERL LDDVVATCRP MTRGEIRELQ KSIKELPERN LNRVAEIVGN
201: HCIASGRDFN DKVIVNLDQA DKVMLWRLHF YVGAVKRPRS SLPS
Arabidopsis Description
Bromodomain testis-specific protein [Source:UniProtKB/TrEMBL;Acc:Q8VY55]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.