Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3A01G414200.1 | Wheat | nucleus | 79.46 | 90.08 |
| TraesCS3D01G408700.2 | Wheat | nucleus | 77.44 | 82.14 |
| HORVU3Hr1G092230.1 | Barley | cytosol | 19.19 | 71.25 |
| KXG33957 | Sorghum | nucleus | 31.99 | 34.93 |
| GSMUA_Achr6P22990_001 | Banana | cytosol | 15.15 | 34.09 |
| AT3G27420.1 | Thale cress | nucleus | 20.88 | 25.41 |
| KRG94362 | Soybean | extracellular | 25.59 | 23.68 |
| CDY03968 | Canola | nucleus | 18.52 | 23.31 |
| KRH07095 | Soybean | nucleus | 24.58 | 22.88 |
| CDY42568 | Canola | plastid | 20.2 | 22.47 |
| CDY36364 | Canola | mitochondrion | 20.2 | 21.74 |
| VIT_14s0066g00150.t01 | Wine grape | nucleus | 25.25 | 20.44 |
| Solyc02g067900.2.1 | Tomato | cytosol | 22.22 | 20.12 |
| PGSC0003DMT400017933 | Potato | cytosol | 22.22 | 19.82 |
| AT5G40600.1 | Thale cress | endoplasmic reticulum | 18.18 | 16.62 |
| Bra033010.1-P | Field mustard | cytosol | 18.52 | 11.18 |
| CDY34147 | Canola | cytosol | 18.18 | 10.13 |
Protein Annotations
| EnsemblPlants:TraesCS3B01G449000.1 | EnsemblPlantsGene:TraesCS3B01G449000 | Gene3D:1.20.1270.220 | InterPro:IPR027353 | InterPro:IPR038336 | InterPro:NET_dom |
| InterPro:NET_sf | PFAM:PF17035 | MapMan:35.2 | : | : | : |
Description
No Description!
Coordinates
chr3B:+:689515916..689522526
Molecular Weight (calculated)
33595.6 Da
IEP (calculated)
8.202
GRAVY (calculated)
-0.382
Length
297 amino acids
Sequence
(BLAST)
(BLAST)
001: MSRYFSERNV SGIDPIEHYK NIISELLLGK EGTFSTGVIK QTGVVMAQYN RKAGEDSLPL FMEEIRGLSK CDMERLKHAL HEVFTILSDE VDEIFGYIFA
101: LSEFRSKKLP SIHGSGSYED GIAPPSVKKQ KTVTVSTIDA YEESHGHIDS DIFAQLTRDI RLIEESGKTR QEAAEMFSDG LLRKLAKMER GVYNLLDTVA
201: SKCRSMTTPE KIELGRRIRK LPETALDYMV EVVKMRRPEI SVSDKVSFNL GRLRWRPFCP GKISGQLCDT GDNSLRLVLL CQMIWKARDK ESTGKAS
101: LSEFRSKKLP SIHGSGSYED GIAPPSVKKQ KTVTVSTIDA YEESHGHIDS DIFAQLTRDI RLIEESGKTR QEAAEMFSDG LLRKLAKMER GVYNLLDTVA
201: SKCRSMTTPE KIELGRRIRK LPETALDYMV EVVKMRRPEI SVSDKVSFNL GRLRWRPFCP GKISGQLCDT GDNSLRLVLL CQMIWKARDK ESTGKAS
001: MPKRTAEACP SSEIQRSRGD TFGSYRSQVA ELLSLGERIS HHDQQEANER HSESVIGAGM SNVEKDNLNV LLRQCVRNLS PEVDEMQECV RSLYLISQLG
101: NKCQSSSPSD FVPEETGGAR EDDIQLLLRS DSDMVKNITS QYSNVLLSKL DNMQQELERL LDDVVATCRP MTRGEIRELQ KSIKELPERN LNRVAEIVGN
201: HCIASGRDFN DKVIVNLDQA DKVMLWRLHF YVGAVKRPRS SLPS
101: NKCQSSSPSD FVPEETGGAR EDDIQLLLRS DSDMVKNITS QYSNVLLSKL DNMQQELERL LDDVVATCRP MTRGEIRELQ KSIKELPERN LNRVAEIVGN
201: HCIASGRDFN DKVIVNLDQA DKVMLWRLHF YVGAVKRPRS SLPS
Arabidopsis Description
Bromodomain testis-specific protein [Source:UniProtKB/TrEMBL;Acc:Q8VY55]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.