Factsheet for VIT_14s0066g00150.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_03s0038g04360.t01
VIT_04s0008g05610.t01
VIT_07s0141g00220.t01
VIT_14s0006g01470.t01
VIT_14s0128g00150.t01
VIT_17s0000g01560.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G27420.1	VIT_14s0006g01470.t01	AT1G66470.1	21798944
AT3G27420.1	VIT_03s0038g04360.t01	AT1G71230.1	21798944
AT3G27420.1	VIT_14s0128g00150.t01	AT3G05210.1	21798944
AT3G27420.1	VIT_07s0141g00220.t01	AT4G02590.1	21798944
AT3G27420.1	VIT_17s0000g01560.t01	AT4G24840.1	21798944
AT3G27420.1	VIT_04s0008g05610.t01	AT4G32190.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH07095	Soybean	nucleus	40.6	46.71
Solyc02g067900.2.1	Tomato	cytosol	40.6	45.43
KRG94362	Soybean	extracellular	38.96	44.55
PGSC0003DMT400017933	Potato	cytosol	39.78	43.84
GSMUA_Achr6P22990_001	Banana	cytosol	14.71	40.91
CDY03968	Canola	nucleus	25.34	39.41
CDY42568	Canola	plastid	27.79	38.2
HORVU3Hr1G092230.1	Barley	cytosol	8.17	37.5
CDY36364	Canola	mitochondrion	27.52	36.59
AT3G27420.1	Thale cress	nucleus	22.89	34.43
AT5G40600.1	Thale cress	endoplasmic reticulum	26.43	29.85
TraesCS3D01G408700.2	Wheat	nucleus	22.34	29.29
TraesCS3A01G414200.1	Wheat	nucleus	19.62	27.48
KXG33957	Sorghum	nucleus	19.89	26.84
TraesCS3B01G449000.1	Wheat	cytosol	20.44	25.25
Bra033010.1-P	Field mustard	cytosol	23.98	17.89
CDY34147	Canola	cytosol	24.52	16.89

Protein Annotations

Gene3D:1.20.1270.220	EntrezGene:100255968	MapMan:15.5.1.3	Gene3D:3.30.50.10	EMBL:AM423279	ProteinID:CAN82033
ProteinID:CAN82033.1	ProteinID:CBI34829	ProteinID:CBI34829.3	UniProt:D7TWF4	EMBL:FN596252	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565
GO:GO:0046872	InterPro:IPR000679	InterPro:IPR013088	InterPro:IPR027353	InterPro:IPR038336	InterPro:NET_dom
InterPro:NET_sf	PFAM:PF00320	PFAM:PF17035	PFscan:PS50114	PFscan:PS51525	PANTHER:PTHR10071
SMART:SM00401	SUPFAM:SSF57716	UniParc:UPI0001BE446C	ArrayExpress:VIT_14s0066g00150	EnsemblPlantsGene:VIT_14s0066g00150	EnsemblPlants:VIT_14s0066g00150.t01
RefSeq:XP_010660834.1	RefSeq:XP_010660835.1	InterPro:Znf_GATA	InterPro:Znf_NHR/GATA	SEG:seg	:

Description

No Description!

Coordinates

chr14:-:26715240..26720948

Molecular Weight (calculated)

40976.5 Da

IEP (calculated)

7.766

GRAVY (calculated)

-0.711

Length

367 amino acids

Sequence
(BLAST)

001: MSEGSKCVVA SAEHNKVGPN YFGFYVREVA ELLSQDKDFL PCSSQASELS ARTGGQVRDG DKIKHGCDGK EAKSSSSSGS LFSNGIGAGI SDFKNERLKA
101: LLRQSVTSLT QEVDEMLDPV LAIRQIQAHL RYKKHQSRNS NGESDGCAGQ FPCKKRKMSS PNASHISCGS SREGSAFECV DGASSEKRKS NIVKSCAHCH
201: TTETLRWRTG PEGHKSLCDA CGIRLEKQRE PLFCSNTGAE KENGEVNDDL KILLENDCSL VEERVKKYSD ELSGTLGLME QQLEQLLDTV MCQCRPMTRR
301: EKQQLQKMIQ KLPPKNLERA VEIIQRGKLP EIHSDEIHVN LEKEDNATLW RLYYYVEAVE KARKLSR

Best Arabidopsis Sequence Match ( AT5G40600.1 )
(BLAST)

001: MTIPVPLESL FPLLHRSVNC SFLPGGAILI SGDFSDFIVE QDLFDNVGFE IARLVARLVF FSLSGAEICF CYIPESAMSK RAAEEMTPSL ESNRTGPDFF
101: GYYRAQVEEL LSQEEKIPHH NHVDAKKSSA EIIGAELSDV KQEKLNALLR QCVLNSIPEV DEMQSRVDSM YLMSQLSNKK RSTLPTNAES VIPEDPRCKE
201: VEDDLRLLMK SDPSLVKEIV GKHSSDLLAR LNERQQHLEK LLDNVVTTCR PMSRGEKRDL QKSIKELPAK NLERVAGIIK NHYVALGKEM PDDVFVINME
301: EEDKVLLWRL HYFVVAVQSA RKLAS

Arabidopsis Description

unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G27420.1); Has 18 /.../st hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). [Source:TAIR;Acc:AT5G40600]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.