Factsheet for VIT_07s0141g00220.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0146g00220.t01
VIT_02s0012g02660.t01
VIT_11s0037g00330.t01
VIT_12s0034g01110.t01
VIT_12s0142g00160.t01
VIT_14s0108g00080.t01
VIT_17s0000g06000.t01
VIT_19s0014g00980.t01
VIT_19s0090g00490.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G02590.1	VIT_19s0014g00980.t01	AT1G78680.1	21798944
AT4G02590.1	VIT_11s0037g00330.t01	AT2G24020.1	21798944
AT4G02590.1	VIT_12s0142g00160.t01	AT2G42870.1	21798944
AT4G02590.1	VIT_14s0108g00080.t01	AT3G28715.1	21798944
AT4G02590.1	VIT_17s0000g06000.t01	AT3G47640.1	21798944
AT4G02590.1	VIT_12s0034g01110.t01	AT4G25315.1	21798944
AT4G02590.1	VIT_01s0146g00220.t01	AT5G14070.1	21798944
AT4G02590.1	VIT_19s0090g00490.t01	AT5G15802.1	21798944
AT4G02590.1	VIT_02s0012g02660.t01	AT5G45620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra036256.1-P	Field mustard	nucleus	62.28	78.95
KRG95612	Soybean	nucleus	78.55	77.74
KRH32094	Soybean	nucleus	76.12	77.74
KRH67287	Soybean	nucleus	77.51	76.71
KRH55381	Soybean	cytosol	17.99	75.36
PGSC0003DMT400049768	Potato	nucleus	77.85	74.5
Solyc09g065820.2.1	Tomato	nucleus	77.85	74.5
Os07t0182200-01	Rice	cytosol	34.6	73.53
Bra018539.1-P	Field mustard	nucleus	62.98	71.65
CDY21898	Canola	nucleus	73.01	70.1
CDX91293	Canola	nucleus	71.63	69.46
CDY22062	Canola	nucleus	72.66	69.08
AT4G02590.1	Thale cress	nucleus	73.01	68.06
CDY18011	Canola	nucleus	70.93	67.43
CDX97278	Canola	nucleus	69.2	66.89
VIT_05s0020g04620.t01	Wine grape	nucleus	71.28	65.81
CDX90930	Canola	nucleus	70.59	65.81
Bra000872.1-P	Field mustard	nucleus	70.24	65.7
CDY18143	Canola	nucleus	69.55	65.69
CDX89919	Canola	nucleus	68.86	63.99
Bra033368.1-P	Field mustard	nucleus	68.86	63.99
GSMUA_Achr4P21070_001	Banana	nucleus	61.25	59.0
GSMUA_Achr5P03100_001	Banana	nucleus	55.02	58.03
AT1G03040.3	Thale cress	nucleus	66.78	57.96
OQU88567	Sorghum	nucleus	55.02	57.4
Zm00001d013073_P002	Maize	nucleus	56.06	56.84
KXG37359	Sorghum	nucleus	55.02	55.99
VIT_14s0030g02230.t01	Wine grape	nucleus	64.01	55.89
Zm00001d018967_P001	Maize	nucleus	55.02	55.79
Os03t0797600-01	Rice	nucleus	56.4	55.44
TraesCS5B01G445900.1	Wheat	nucleus	53.63	55.16
TraesCS5D01G449200.1	Wheat	nucleus	53.63	55.16
TraesCS5A01G441900.1	Wheat	nucleus	51.9	53.38
GSMUA_Achr9P25560_001	Banana	nucleus	61.59	50.42
HORVU5Hr1G106310.3	Barley	nucleus	52.6	48.72
VIT_11s0037g00040.t01	Wine grape	nucleus	48.44	27.78
VIT_07s0005g02510.t01	Wine grape	nucleus	15.57	22.5
VIT_11s0016g00380.t01	Wine grape	nucleus	35.99	19.4
VIT_18s0001g10270.t01	Wine grape	nucleus	16.95	13.28
VIT_07s0031g00450.t01	Wine grape	nucleus, plastid	16.95	12.44
VIT_17s0000g06930.t01	Wine grape	nucleus	15.22	10.4
VIT_07s0005g05100.t01	Wine grape	mitochondrion, nucleus	15.57	9.74
VIT_12s0028g01110.t01	Wine grape	nucleus	18.69	9.68
VIT_15s0021g02690.t01	Wine grape	nucleus	14.88	9.25
VIT_14s0060g00260.t01	Wine grape	nucleus	20.07	8.18

Protein Annotations

EntrezGene:100247732	wikigene:100247732	MapMan:15.5.32	Gene3D:4.10.280.10	ProteinID:CBI17928	ProteinID:CBI17928.3
UniProt:D7SQJ7	EMBL:FN594965	GO:GO:0001046	GO:GO:0001228	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006366	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0045944	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598
InterPro:IPR036638	EntrezGene:LOC100247732	wikigene:LOC100247732	PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR16223
PANTHER:PTHR16223:SF15	SMART:SM00353	SUPFAM:SSF47459	TIGR:TC59430	UniParc:UPI00015CAAAB	ArrayExpress:VIT_07s0141g00220
EnsemblPlantsGene:VIT_07s0141g00220	EnsemblPlants:VIT_07s0141g00220.t01	RefSeq:XP_002281626	RefSeq:XP_002281626.1	InterPro:bHLH_dom	SEG:seg

Description

No Description!

Coordinates

chr7:+:138183..144329

Molecular Weight (calculated)

31104.1 Da

IEP (calculated)

6.375

GRAVY (calculated)

-0.342

Length

289 amino acids

Sequence
(BLAST)

001: MASNPSEAPA DDFLEQILGI PTYPAADPNL AANDVNLAAP MVLQLGSGEG SGHIAGGYQG TMFPLGLRLE QGKSSFLKPE DASGSGKRFR EEVIDGRAST
101: VKNAFHGQPM QATVAAAPHP PAIRPRVRAR RGQATDPHSI AERLRRERIA ERIRALQELV PSVNKTDRAA MLDEIVDYVK FLRLQVKVLS MSRLGGAGAV
201: APLVTDIPLA SVEEEASEGG RNEPAWEKWS NDGTERQVAK LMEENVGAAM QFLQSKALCI MPISLASAIY HSQQPDTTPL IKPQTNPPS

Best Arabidopsis Sequence Match ( AT4G02590.2 )
(BLAST)

001: MASNNPHDNL SDQTPSDDFF EQILGLPNFS ASSAAGLSGV DGGLGGGAPP MMLQLGSGEE GSHMGGLGGS GPTGFHNQMF PLGLSLDQGK GPGFLRPEGG
101: HGSGKRFSDD VVDNRCSSMK PVFHGQPMQQ PPPSAPHQPT SIRPRVRARR GQATDPHSIA ERLRRERIAE RIRALQELVP TVNKTDRAAM IDEIVDYVKF
201: LRLQVKVLSM SRLGGAGAVA PLVTDMPLSS SVEDETGEGG RTPQPAWEKW SNDGTERQVA KLMEENVGAA MQLLQSKALC MMPISLAMAI YHSQPPDTSS
301: VVKPENNPPQ

Arabidopsis Description

UNE12Transcription factor UNE12 [Source:UniProtKB/Swiss-Prot;Acc:O22768]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.