Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc01g086860.2.1 | Tomato | nucleus | 60.75 | 65.0 |
| Solyc01g112370.2.1 | Tomato | nucleus | 61.68 | 62.26 |
| PGSC0003DMT400065007 | Potato | cytosol | 47.66 | 61.45 |
| KRH49908 | Soybean | nucleus | 57.94 | 56.36 |
| CDX92692 | Canola | cytosol, mitochondrion, nucleus | 54.21 | 53.7 |
| Bra019176.1-P | Field mustard | nucleus | 55.14 | 47.2 |
| CDY11069 | Canola | nucleus | 55.14 | 47.2 |
| AT4G25315.1 | Thale cress | nucleus | 55.14 | 46.46 |
| Bra013885.1-P | Field mustard | cytosol, nucleus, plastid | 54.21 | 46.4 |
| GSMUA_Achr2P20240_001 | Banana | nucleus | 54.21 | 46.03 |
| CDX89423 | Canola | cytosol, mitochondrion, nucleus | 53.27 | 45.6 |
| TraesCS1B01G396100.1 | Wheat | cytosol | 52.34 | 43.08 |
| TraesCS1A01G375700.1 | Wheat | cytosol | 52.34 | 43.08 |
| TraesCS1D01G383000.1 | Wheat | cytosol | 51.4 | 42.31 |
| TraesCS5A01G232000.1 | Wheat | cytosol | 45.79 | 39.2 |
| TraesCS5B01G230300.1 | Wheat | cytosol | 45.79 | 39.2 |
| TraesCS5D01G236000.1 | Wheat | cytosol | 45.79 | 39.2 |
| Zm00001d020659_P001 | Maize | mitochondrion | 50.47 | 38.85 |
| CDX94458 | Canola | extracellular | 55.14 | 36.88 |
| HORVU1Hr1G083390.16 | Barley | cytosol | 51.4 | 30.73 |
| Os09t0516800-01 | Rice | cytosol, mitochondrion, peroxisome | 47.66 | 30.18 |
| HORVU5Hr1G066790.2 | Barley | plastid | 43.93 | 29.56 |
| OQU89591 | Sorghum | cytosol, plastid | 54.21 | 28.71 |
Protein Annotations
| ArrayExpress:VIT_12s0034g01110 | EMBL:AM442916 | EMBL:FN595497 | EnsemblPlants:VIT_12s0034g01110.t01 | EnsemblPlantsGene:VIT_12s0034g01110 | EntrezGene:100242881 |
| EntrezGene:LOC100242881 | InterPro:DUF3128 | PANTHER:PTHR28052 | PFAM:PF11326 | ProteinID:CAN71906 | ProteinID:CAN71906.1 |
| ProteinID:CBI23869 | ProteinID:CBI23869.3 | RefSeq:XP_002276143 | RefSeq:XP_002276143.1 | TIGR:TC64466 | UniParc:UPI00015CAF1C |
| UniProt:D7T040 | wikigene:100242881 | wikigene:LOC100242881 | MapMan:35.2 | : | : |
Description
No Description!
Coordinates
chr12:+:17003327..17009882
Molecular Weight (calculated)
12545.7 Da
IEP (calculated)
6.093
GRAVY (calculated)
-0.764
Length
107 amino acids
Sequence
(BLAST)
(BLAST)
001: MTSEGEGQAA TVPKRRLSCK TCIDNLWFCY SPVHQMQQYY RLGVLDNCAD KWSSLLDCLS LKTKRSSEVQ EILENREKDK PHIWTFRTSE ESSSHWKEVF
101: GHLDDME
101: GHLDDME
001: MSSENEDSSS VRRRVSCTKC FDALWFCYSP FYQMQQYYRV GKLDDCTKKF SDLFDCLSLK TKRASEAERI LEEQEKAAAE KHIWIMRTQE EAVSHWNETF
101: GHLEDPNS
101: GHLEDPNS
Arabidopsis Description
At4g25315 [Source:UniProtKB/TrEMBL;Acc:Q147K0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.