Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 2
- mitochondrion 2
- cytosol 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc01g086860.2.1 | Tomato | nucleus | 85.54 | 71.0 |
| Solyc01g112370.2.1 | Tomato | nucleus | 85.54 | 66.98 |
| VIT_12s0034g01110.t01 | Wine grape | nucleus | 61.45 | 47.66 |
| KRH49908 | Soybean | nucleus | 56.63 | 42.73 |
| CDX92692 | Canola | cytosol, mitochondrion, nucleus | 49.4 | 37.96 |
| Bra013885.1-P | Field mustard | cytosol, nucleus, plastid | 54.22 | 36.0 |
| TraesCS5A01G232000.1 | Wheat | cytosol | 54.22 | 36.0 |
| AT4G25315.1 | Thale cress | nucleus | 54.22 | 35.43 |
| TraesCS5D01G236000.1 | Wheat | cytosol | 53.01 | 35.2 |
| TraesCS5B01G230300.1 | Wheat | cytosol | 53.01 | 35.2 |
| CDX89423 | Canola | cytosol, mitochondrion, nucleus | 53.01 | 35.2 |
| GSMUA_Achr2P20240_001 | Banana | nucleus | 53.01 | 34.92 |
| CDY11069 | Canola | nucleus | 51.81 | 34.4 |
| Bra019176.1-P | Field mustard | nucleus | 51.81 | 34.4 |
| TraesCS1A01G375700.1 | Wheat | cytosol | 53.01 | 33.85 |
| TraesCS1B01G396100.1 | Wheat | cytosol | 53.01 | 33.85 |
| TraesCS1D01G383000.1 | Wheat | cytosol | 53.01 | 33.85 |
| Zm00001d020659_P001 | Maize | mitochondrion | 48.19 | 28.78 |
| CDX94458 | Canola | extracellular | 54.22 | 28.12 |
| HORVU5Hr1G066790.2 | Barley | plastid | 51.81 | 27.04 |
| HORVU1Hr1G083390.16 | Barley | cytosol | 51.81 | 24.02 |
| Os09t0516800-01 | Rice | cytosol, mitochondrion, peroxisome | 48.19 | 23.67 |
| OQU89591 | Sorghum | cytosol, plastid | 53.01 | 21.78 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400065007 | EnsemblPlantsGene:PGSC0003DMG400025251 | InterPro:DUF3128 | ncoils:Coil | PANTHER:PTHR28052 | PFAM:PF11326 |
| PGSC:PGSC0003DMG400025251 | UniParc:UPI0002963346 | UniProt:M1CD91 | MapMan:35.2 | : | : |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400025251]
Coordinates
chr1:-:66252221..66253522
Molecular Weight (calculated)
9649.4 Da
IEP (calculated)
5.116
GRAVY (calculated)
-0.670
Length
83 amino acids
Sequence
(BLAST)
(BLAST)
1: MCNYVVAAPV HQMQQYYRLG ALDNCSKKWS GLVDCLTLKT KRSSEVEEIL EAREKEKPQL WSTRTPEEAA AYWNGLFDHL NEE
1: MSRWSNITSN GDDTGNDLAP FYQMQQYYRV GKLDDCTKKF SDLFDCLSLK TKRASEAERI LEEQEKAAAE KHIWIMRTQE EAVSHWNETF GHLEDPNS
Arabidopsis Description
At4g25315 [Source:UniProtKB/TrEMBL;Acc:Q147K0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.