Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G230300.1 | Wheat | cytosol | 97.6 | 97.6 |
| TraesCS5A01G232000.1 | Wheat | cytosol | 93.6 | 93.6 |
| TraesCS1D01G383000.1 | Wheat | cytosol | 65.6 | 63.08 |
| HORVU5Hr1G066790.2 | Barley | plastid | 78.4 | 61.64 |
| Zm00001d020659_P001 | Maize | mitochondrion | 61.6 | 55.4 |
| Solyc01g086860.2.1 | Tomato | nucleus | 43.2 | 54.0 |
| PGSC0003DMT400065007 | Potato | cytosol | 35.2 | 53.01 |
| Solyc01g112370.2.1 | Tomato | nucleus | 43.2 | 50.94 |
| GSMUA_Achr2P20240_001 | Banana | nucleus | 48.8 | 48.41 |
| KRH49908 | Soybean | nucleus | 42.4 | 48.18 |
| VIT_12s0034g01110.t01 | Wine grape | nucleus | 39.2 | 45.79 |
| CDX92692 | Canola | cytosol, mitochondrion, nucleus | 36.0 | 41.67 |
| Os09t0516800-01 | Rice | cytosol, mitochondrion, peroxisome | 54.4 | 40.24 |
| OQU89591 | Sorghum | cytosol, plastid | 62.4 | 38.61 |
| Bra013885.1-P | Field mustard | cytosol, nucleus, plastid | 37.6 | 37.6 |
| CDY11069 | Canola | nucleus | 36.8 | 36.8 |
| CDX89423 | Canola | cytosol, mitochondrion, nucleus | 36.8 | 36.8 |
| Bra019176.1-P | Field mustard | nucleus | 36.8 | 36.8 |
| AT4G25315.1 | Thale cress | nucleus | 36.8 | 36.22 |
| CDX94458 | Canola | extracellular | 37.6 | 29.38 |
Protein Annotations
| EnsemblPlants:TraesCS5D01G236000.1 | EnsemblPlantsGene:TraesCS5D01G236000 | InterPro:DUF3128 | PANTHER:PTHR28052 | PFAM:PF11326 | SEG:seg |
| MapMan:35.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chr5D:+:344686877..344692585
Molecular Weight (calculated)
14852.9 Da
IEP (calculated)
9.934
GRAVY (calculated)
-0.908
Length
125 amino acids
Sequence
(BLAST)
(BLAST)
001: MEPEEKPNRP PSRLDCIKYF NALWSCYSPF HQMQNYYRYG VFDNCSSKWR DLVDCLMLRT KSRAEVEEML MAREKARPHF WTYRTVEEAS ANWWKMYKHR
101: VMMSSPPKTA GSAAPPPKPA APKKR
101: VMMSSPPKTA GSAAPPPKPA APKKR
001: MSSENEDSSS VRRRVSCTKC FDALWFCYSP FYQMQQYYRV GKLDDCTKKF SDLFDCLSLK TKRASEAERI LEEQEKAAAE KHIWIMRTQE EAVSHWNETF
101: GHLEDPNS
101: GHLEDPNS
Arabidopsis Description
At4g25315 [Source:UniProtKB/TrEMBL;Acc:Q147K0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.