Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
Solyc01g086860.2.1 | Tomato | nucleus | 57.27 | 63.0 |
Solyc01g112370.2.1 | Tomato | nucleus | 57.27 | 59.43 |
VIT_12s0034g01110.t01 | Wine grape | nucleus | 56.36 | 57.94 |
PGSC0003DMT400065007 | Potato | cytosol | 42.73 | 56.63 |
GSMUA_Achr2P20240_001 | Banana | nucleus | 55.45 | 48.41 |
CDX92692 | Canola | cytosol, mitochondrion, nucleus | 45.45 | 46.3 |
TraesCS5D01G236000.1 | Wheat | cytosol | 48.18 | 42.4 |
TraesCS5B01G230300.1 | Wheat | cytosol | 47.27 | 41.6 |
TraesCS5A01G232000.1 | Wheat | cytosol | 47.27 | 41.6 |
TraesCS1D01G383000.1 | Wheat | cytosol | 49.09 | 41.54 |
TraesCS1B01G396100.1 | Wheat | cytosol | 49.09 | 41.54 |
TraesCS1A01G375700.1 | Wheat | cytosol | 49.09 | 41.54 |
CDY11069 | Canola | nucleus | 46.36 | 40.8 |
CDX89423 | Canola | cytosol, mitochondrion, nucleus | 46.36 | 40.8 |
Bra019176.1-P | Field mustard | nucleus | 46.36 | 40.8 |
Bra013885.1-P | Field mustard | cytosol, nucleus, plastid | 46.36 | 40.8 |
AT4G25315.1 | Thale cress | nucleus | 46.36 | 40.16 |
Zm00001d020659_P001 | Maize | mitochondrion | 49.09 | 38.85 |
CDX94458 | Canola | extracellular | 46.36 | 31.88 |
HORVU5Hr1G066790.2 | Barley | plastid | 45.45 | 31.45 |
HORVU1Hr1G083390.16 | Barley | cytosol | 47.27 | 29.05 |
Os09t0516800-01 | Rice | cytosol, mitochondrion, peroxisome | 44.55 | 28.99 |
OQU89591 | Sorghum | cytosol, plastid | 50.91 | 27.72 |
Protein Annotations
EMBL:ACUP02004646 | EMBL:BT089558 | EnsemblPlants:KRH49908 | EnsemblPlantsGene:GLYMA_07G187100 | EntrezGene:100305779 | InterPro:DUF3128 |
PANTHER:PTHR28052 | PFAM:PF11326 | ProteinID:KRH49908 | ProteinID:KRH49908.1 | UniParc:UPI0001B14FE1 | UniProt:C6SWL5 |
MapMan:35.2 | : | : | : | : | : |
Description
hypothetical protein
Coordinates
chr7:+:35453169..35455891
Molecular Weight (calculated)
12978.3 Da
IEP (calculated)
5.661
GRAVY (calculated)
-0.718
Length
110 amino acids
Sequence
(BLAST)
(BLAST)
001: MMSMEKEASS STPTRKLSCT ACFDAVYFCY SPVHQMQQYY RLGKFDNCSG KWKAMVDCLM LKTKPTSQVQ EVLDTEEKSK FKSHIWTFRT PEEASYYWQE
101: LYGHLDEPEE
101: LYGHLDEPEE
001: MSSENEDSSS VRRRVSCTKC FDALWFCYSP FYQMQQYYRV GKLDDCTKKF SDLFDCLSLK TKRASEAERI LEEQEKAAAE KHIWIMRTQE EAVSHWNETF
101: GHLEDPNS
101: GHLEDPNS
Arabidopsis Description
At4g25315 [Source:UniProtKB/TrEMBL;Acc:Q147K0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.