Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc01g086860.2.1 | Tomato | nucleus | 47.62 | 60.0 |
| Solyc01g112370.2.1 | Tomato | nucleus | 47.62 | 56.6 |
| KRH49908 | Soybean | nucleus | 48.41 | 55.45 |
| VIT_12s0034g01110.t01 | Wine grape | nucleus | 46.03 | 54.21 |
| TraesCS1B01G396100.1 | Wheat | cytosol | 54.76 | 53.08 |
| PGSC0003DMT400065007 | Potato | cytosol | 34.92 | 53.01 |
| CDX92692 | Canola | cytosol, mitochondrion, nucleus | 43.65 | 50.93 |
| TraesCS1D01G383000.1 | Wheat | cytosol | 52.38 | 50.77 |
| TraesCS1A01G375700.1 | Wheat | cytosol | 52.38 | 50.77 |
| Zm00001d020659_P001 | Maize | mitochondrion | 54.76 | 49.64 |
| TraesCS5D01G236000.1 | Wheat | cytosol | 48.41 | 48.8 |
| TraesCS5B01G230300.1 | Wheat | cytosol | 48.41 | 48.8 |
| TraesCS5A01G232000.1 | Wheat | cytosol | 48.41 | 48.8 |
| Bra013885.1-P | Field mustard | cytosol, nucleus, plastid | 45.24 | 45.6 |
| CDY11069 | Canola | nucleus | 45.24 | 45.6 |
| Bra019176.1-P | Field mustard | nucleus | 45.24 | 45.6 |
| AT4G25315.1 | Thale cress | nucleus | 45.24 | 44.88 |
| CDX89423 | Canola | cytosol, mitochondrion, nucleus | 44.44 | 44.8 |
| Os09t0516800-01 | Rice | cytosol, mitochondrion, peroxisome | 50.0 | 37.28 |
| HORVU1Hr1G083390.16 | Barley | cytosol | 51.59 | 36.31 |
| CDX94458 | Canola | extracellular | 45.24 | 35.62 |
| HORVU5Hr1G066790.2 | Barley | plastid | 43.65 | 34.59 |
| OQU89591 | Sorghum | cytosol, plastid | 54.76 | 34.16 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr2P20240_001 | EnsemblPlants:GSMUA_Achr2T20240_001 | EnsemblPlantsGene:GSMUA_Achr2G20240_001 | InterPro:DUF3128 | PANTHER:PTHR28052 | PFAM:PF11326 |
| SEG:seg | UniParc:UPI000295420A | UniProt:M0S9L5 | MapMan:35.2 | : | : |
Description
Expressed protein [Source:Projected from Arabidopsis thaliana (AT4G25315) TAIR;Acc:AT4G25315]
Coordinates
chr2:+:20108665..20113862
Molecular Weight (calculated)
14532.1 Da
IEP (calculated)
7.504
GRAVY (calculated)
-0.692
Length
126 amino acids
Sequence
(BLAST)
(BLAST)
001: MDAKEGEKAA DAAAASPSSP TTSSSQEARK LSCTKHFDAL WFCYSPFHQV QQYYRHGEFD NCFGKWNALF DCLNLKTKKS SEVQEILEAR EKAKQHIWTI
101: RTVEEASVNW WMMYGHIFKL PPKPDP
101: RTVEEASVNW WMMYGHIFKL PPKPDP
001: MSSENEDSSS VRRRVSCTKC FDALWFCYSP FYQMQQYYRV GKLDDCTKKF SDLFDCLSLK TKRASEAERI LEEQEKAAAE KHIWIMRTQE EAVSHWNETF
101: GHLEDPNS
101: GHLEDPNS
Arabidopsis Description
At4g25315 [Source:UniProtKB/TrEMBL;Acc:Q147K0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.