Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 3
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc01g086860.2.1 | Tomato | nucleus | 92.45 | 98.0 |
| PGSC0003DMT400065007 | Potato | cytosol | 66.98 | 85.54 |
| VIT_12s0034g01110.t01 | Wine grape | nucleus | 62.26 | 61.68 |
| KRH49908 | Soybean | nucleus | 59.43 | 57.27 |
| CDX92692 | Canola | cytosol, mitochondrion, nucleus | 52.83 | 51.85 |
| GSMUA_Achr2P20240_001 | Banana | nucleus | 56.6 | 47.62 |
| Bra013885.1-P | Field mustard | cytosol, nucleus, plastid | 55.66 | 47.2 |
| CDX89423 | Canola | cytosol, mitochondrion, nucleus | 54.72 | 46.4 |
| AT4G25315.1 | Thale cress | nucleus | 53.77 | 44.88 |
| Bra019176.1-P | Field mustard | nucleus | 52.83 | 44.8 |
| CDY11069 | Canola | nucleus | 52.83 | 44.8 |
| TraesCS5A01G232000.1 | Wheat | cytosol | 51.89 | 44.0 |
| TraesCS5D01G236000.1 | Wheat | cytosol | 50.94 | 43.2 |
| TraesCS5B01G230300.1 | Wheat | cytosol | 50.94 | 43.2 |
| TraesCS1A01G375700.1 | Wheat | cytosol | 51.89 | 42.31 |
| TraesCS1B01G396100.1 | Wheat | cytosol | 51.89 | 42.31 |
| TraesCS1D01G383000.1 | Wheat | cytosol | 51.89 | 42.31 |
| Zm00001d020659_P001 | Maize | mitochondrion | 50.0 | 38.13 |
| CDX94458 | Canola | extracellular | 55.66 | 36.88 |
| HORVU5Hr1G066790.2 | Barley | plastid | 48.11 | 32.08 |
| HORVU1Hr1G083390.16 | Barley | cytosol | 50.94 | 30.17 |
| Os09t0516800-01 | Rice | cytosol, mitochondrion, peroxisome | 46.23 | 28.99 |
| OQU89591 | Sorghum | cytosol, plastid | 53.77 | 28.22 |
Protein Annotations
| EnsemblPlants:Solyc01g112370.2.1 | EnsemblPlantsGene:Solyc01g112370.2 | InterPro:DUF3128 | PANTHER:PTHR28052 | PFAM:PF11326 | UniParc:UPI0002767CA2 |
| UniProt:K4B498 | MapMan:35.2 | : | : | : | : |
Description
No Description!
Coordinates
chr1:-:98456517..98457041
Molecular Weight (calculated)
12469.7 Da
IEP (calculated)
6.248
GRAVY (calculated)
-0.770
Length
106 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGEVQMSSE KQPRRGLSCT RYFVALWFCY SPVHQMQQYY RLGALDNCSK KWSGLVDCLT LKTKRSSEVE EILETREKAK PHQWSTRTPE EAAAYWSELF
101: DHLDEE
101: DHLDEE
001: MSSENEDSSS VRRRVSCTKC FDALWFCYSP FYQMQQYYRV GKLDDCTKKF SDLFDCLSLK TKRASEAERI LEEQEKAAAE KHIWIMRTQE EAVSHWNETF
101: GHLEDPNS
101: GHLEDPNS
Arabidopsis Description
At4g25315 [Source:UniProtKB/TrEMBL;Acc:Q147K0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.