Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX89423 | Canola | cytosol, mitochondrion, nucleus | 84.25 | 85.6 |
| Bra013885.1-P | Field mustard | cytosol, nucleus, plastid | 83.46 | 84.8 |
| CDX92692 | Canola | cytosol, mitochondrion, nucleus | 70.87 | 83.33 |
| Bra019176.1-P | Field mustard | nucleus | 81.89 | 83.2 |
| CDY11069 | Canola | nucleus | 81.89 | 83.2 |
| CDX94458 | Canola | extracellular | 80.31 | 63.75 |
| Solyc01g086860.2.1 | Tomato | nucleus | 45.67 | 58.0 |
| VIT_12s0034g01110.t01 | Wine grape | nucleus | 46.46 | 55.14 |
| PGSC0003DMT400065007 | Potato | cytosol | 35.43 | 54.22 |
| Solyc01g112370.2.1 | Tomato | nucleus | 44.88 | 53.77 |
| KRH49908 | Soybean | nucleus | 40.16 | 46.36 |
| GSMUA_Achr2P20240_001 | Banana | nucleus | 44.88 | 45.24 |
| TraesCS1B01G396100.1 | Wheat | cytosol | 43.31 | 42.31 |
| TraesCS1D01G383000.1 | Wheat | cytosol | 41.73 | 40.77 |
| TraesCS1A01G375700.1 | Wheat | cytosol | 41.73 | 40.77 |
| Zm00001d020659_P001 | Maize | mitochondrion | 41.73 | 38.13 |
| TraesCS5A01G232000.1 | Wheat | cytosol | 37.01 | 37.6 |
| TraesCS5B01G230300.1 | Wheat | cytosol | 36.22 | 36.8 |
| TraesCS5D01G236000.1 | Wheat | cytosol | 36.22 | 36.8 |
| Os09t0516800-01 | Rice | cytosol, mitochondrion, peroxisome | 41.73 | 31.36 |
| HORVU1Hr1G083390.16 | Barley | cytosol | 40.94 | 29.05 |
| OQU89591 | Sorghum | cytosol, plastid | 44.09 | 27.72 |
| HORVU5Hr1G066790.2 | Barley | plastid | 34.65 | 27.67 |
Protein Annotations
| ArrayExpress:AT4G25315 | EMBL:BT026093 | EnsemblPlants:AT4G25315.1 | EnsemblPlantsGene:AT4G25315 | EntrezGene:2745726 | GO:GO:0003674 |
| GO:GO:0008150 | InterPro:DUF3128 | ncoils:Coil | PANTHER:PTHR28052 | PFAM:PF11326 | PO:PO:0000293 |
| ProteinID:AEE85039.1 | RefSeq:AT4G25315 | RefSeq:AT4G25315-TAIR-G | RefSeq:NP_974615.1 | TAIR:AT4G25315 | TAIR:AT4G25315.1 |
| UniParc:UPI000034F1C2 | UniProt:Q147K0 | MapMan:35.2 | : | : | : |
Description
At4g25315 [Source:UniProtKB/TrEMBL;Acc:Q147K0]
Coordinates
chr4:-:12951109..12952936
Molecular Weight (calculated)
14910.2 Da
IEP (calculated)
4.818
GRAVY (calculated)
-0.838
Length
127 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSENEDSSS VRRRVSCTKC FDALWFCYWM SRWSNITSNG DDTGNDLAPF YQMQQYYRVG KLDDCTKKFS DLFDCLSLKT KRASEAERIL EEQEKAAAEK
101: HIWIMRTQEE AVSHWNETFG HLEDPNS
101: HIWIMRTQEE AVSHWNETFG HLEDPNS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.