Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- plastid 1
- extracellular 6
- golgi 4
- plasma membrane 5
- endoplasmic reticulum 4
- vacuole 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra013885.1-P | Field mustard | cytosol, nucleus, plastid | 75.62 | 96.8 |
| CDX89423 | Canola | cytosol, mitochondrion, nucleus | 75.0 | 96.0 |
| CDX92692 | Canola | cytosol, mitochondrion, nucleus | 57.5 | 85.19 |
| CDY11069 | Canola | nucleus | 66.25 | 84.8 |
| AT4G25315.1 | Thale cress | nucleus | 63.75 | 80.31 |
| Solyc01g086860.2.1 | Tomato | nucleus | 37.5 | 60.0 |
| Solyc01g112370.2.1 | Tomato | nucleus | 36.88 | 55.66 |
| VIT_12s0034g01110.t01 | Wine grape | nucleus | 36.88 | 55.14 |
| PGSC0003DMT400065007 | Potato | cytosol | 28.12 | 54.22 |
| KRH49908 | Soybean | nucleus | 31.88 | 46.36 |
| GSMUA_Achr2P20240_001 | Banana | nucleus | 35.62 | 45.24 |
| TraesCS1B01G396100.1 | Wheat | cytosol | 31.25 | 38.46 |
| TraesCS1A01G375700.1 | Wheat | cytosol | 30.62 | 37.69 |
| TraesCS1D01G383000.1 | Wheat | cytosol | 30.62 | 37.69 |
| TraesCS5A01G232000.1 | Wheat | cytosol | 29.38 | 37.6 |
| TraesCS5B01G230300.1 | Wheat | cytosol | 29.38 | 37.6 |
| TraesCS5D01G236000.1 | Wheat | cytosol | 29.38 | 37.6 |
| Zm00001d020659_P001 | Maize | mitochondrion | 31.25 | 35.97 |
| Os09t0516800-01 | Rice | cytosol, mitochondrion, peroxisome | 31.88 | 30.18 |
| HORVU5Hr1G066790.2 | Barley | plastid | 28.75 | 28.93 |
| HORVU1Hr1G083390.16 | Barley | cytosol | 30.62 | 27.37 |
| OQU89591 | Sorghum | cytosol, plastid | 33.12 | 26.24 |
Protein Annotations
| EnsemblPlants:CDX94458 | EnsemblPlantsGene:GSBRNA2T00157628001 | GO:A0A078E4V0 | InterPro:DUF3128 | PANTHER:PTHR28052 | PFAM:PF11326 |
| ProteinID:CDX94458 | ProteinID:CDX94458.1 | TMHMM:TMhelix | UniParc:UPI0004EEE2BE | MapMan:35.2 | : |
Description
BnaC01g17260D
Coordinates
chrLK031881:+:1357374..1359015
Molecular Weight (calculated)
18771.1 Da
IEP (calculated)
5.925
GRAVY (calculated)
-0.381
Length
160 amino acids
Sequence
(BLAST)
(BLAST)
001: MSHRQCIIFF FWAFIIGLYI PISISSFPHL LGVDTLSTEM EESSAVRRRV SCTKYFDALW FCYWISRCSN ITSNGDETEQ APYYQMQQYY RVGKLDDCTK
101: KFSALFDCLS LKTKSASEAE KIMEEREKAD AAKHIWIMRT HEEASSHWNE TFGHLDDPNY
101: KFSALFDCLS LKTKSASEAE KIMEEREKAD AAKHIWIMRT HEEASSHWNE TFGHLDDPNY
001: MSSENEDSSS VRRRVSCTKC FDALWFCYWM SRWSNITSNG DDTGNDLAPF YQMQQYYRVG KLDDCTKKFS DLFDCLSLKT KRASEAERIL EEQEKAAAEK
101: HIWIMRTQEE AVSHWNETFG HLEDPNS
101: HIWIMRTQEE AVSHWNETFG HLEDPNS
Arabidopsis Description
At4g25315 [Source:UniProtKB/TrEMBL;Acc:Q147K0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.