Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY11069 | Canola | nucleus | 88.89 | 76.8 |
| CDX89423 | Canola | cytosol, mitochondrion, nucleus | 87.96 | 76.0 |
| AT4G25315.1 | Thale cress | nucleus | 83.33 | 70.87 |
| CDX94458 | Canola | extracellular | 85.19 | 57.5 |
| Solyc01g086860.2.1 | Tomato | nucleus | 52.78 | 57.0 |
| VIT_12s0034g01110.t01 | Wine grape | nucleus | 53.7 | 54.21 |
| Solyc01g112370.2.1 | Tomato | nucleus | 51.85 | 52.83 |
| PGSC0003DMT400065007 | Potato | cytosol | 37.96 | 49.4 |
| KRH49908 | Soybean | nucleus | 46.3 | 45.45 |
| GSMUA_Achr2P20240_001 | Banana | nucleus | 50.93 | 43.65 |
| TraesCS1B01G396100.1 | Wheat | cytosol | 46.3 | 38.46 |
| TraesCS1A01G375700.1 | Wheat | cytosol | 45.37 | 37.69 |
| TraesCS1D01G383000.1 | Wheat | cytosol | 45.37 | 37.69 |
| TraesCS5A01G232000.1 | Wheat | cytosol | 41.67 | 36.0 |
| TraesCS5B01G230300.1 | Wheat | cytosol | 41.67 | 36.0 |
| TraesCS5D01G236000.1 | Wheat | cytosol | 41.67 | 36.0 |
| Zm00001d020659_P001 | Maize | mitochondrion | 45.37 | 35.25 |
| Os09t0516800-01 | Rice | cytosol, mitochondrion, peroxisome | 47.22 | 30.18 |
| HORVU1Hr1G083390.16 | Barley | cytosol | 45.37 | 27.37 |
| OQU89591 | Sorghum | cytosol, plastid | 50.93 | 27.23 |
| HORVU5Hr1G066790.2 | Barley | plastid | 38.89 | 26.42 |
Protein Annotations
| EnsemblPlants:CDX92692 | EnsemblPlantsGene:GSBRNA2T00154505001 | InterPro:DUF3128 | PANTHER:PTHR28052 | PFAM:PF11326 | ProteinID:CDX92692 |
| ProteinID:CDX92692.1 | UniParc:UPI0004EBE135 | MapMan:35.2 | : | : | : |
Description
BnaC07g39500D
Coordinates
chrLK031873:-:338224..339808
Molecular Weight (calculated)
12802.9 Da
IEP (calculated)
4.935
GRAVY (calculated)
-0.758
Length
108 amino acids
Sequence
(BLAST)
(BLAST)
001: MTTETDDSTA VRRRVSCTKC FDALWFCYSP FYQMQQYYRV GKLDDCTKKF SDLFDCLSLK TKTASEAEKI MEEQEQAEAA KHIWIMRTRE EASCHWNETF
101: GHLDDPNY
101: GHLDDPNY
001: MSSENEDSSS VRRRVSCTKC FDALWFCYSP FYQMQQYYRV GKLDDCTKKF SDLFDCLSLK TKRASEAERI LEEQEKAAAE KHIWIMRTQE EAVSHWNETF
101: GHLEDPNS
101: GHLEDPNS
Arabidopsis Description
At4g25315 [Source:UniProtKB/TrEMBL;Acc:Q147K0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.