Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G383000.1 | Wheat | cytosol | 98.46 | 98.46 |
| TraesCS1B01G396100.1 | Wheat | cytosol | 95.38 | 95.38 |
| HORVU1Hr1G083390.16 | Barley | cytosol | 92.31 | 67.04 |
| TraesCS5A01G232000.1 | Wheat | cytosol | 60.77 | 63.2 |
| Zm00001d020659_P001 | Maize | mitochondrion | 65.38 | 61.15 |
| Solyc01g086860.2.1 | Tomato | nucleus | 43.08 | 56.0 |
| PGSC0003DMT400065007 | Potato | cytosol | 33.85 | 53.01 |
| GSMUA_Achr2P20240_001 | Banana | nucleus | 50.77 | 52.38 |
| VIT_12s0034g01110.t01 | Wine grape | nucleus | 43.08 | 52.34 |
| Solyc01g112370.2.1 | Tomato | nucleus | 42.31 | 51.89 |
| KRH49908 | Soybean | nucleus | 41.54 | 49.09 |
| Os09t0516800-01 | Rice | cytosol, mitochondrion, peroxisome | 60.77 | 46.75 |
| CDX92692 | Canola | cytosol, mitochondrion, nucleus | 37.69 | 45.37 |
| AT4G25315.1 | Thale cress | nucleus | 40.77 | 41.73 |
| OQU89591 | Sorghum | cytosol, plastid | 63.08 | 40.59 |
| CDY11069 | Canola | nucleus | 38.46 | 40.0 |
| Bra019176.1-P | Field mustard | nucleus | 38.46 | 40.0 |
| Bra013885.1-P | Field mustard | cytosol, nucleus, plastid | 37.69 | 39.2 |
| CDX89423 | Canola | cytosol, mitochondrion, nucleus | 36.92 | 38.4 |
| CDX94458 | Canola | extracellular | 37.69 | 30.62 |
Protein Annotations
| EnsemblPlants:TraesCS1A01G375700.1 | EnsemblPlantsGene:TraesCS1A01G375700 | InterPro:DUF3128 | PANTHER:PTHR28052 | PFAM:PF11326 | SEG:seg |
| MapMan:35.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chr1A:+:550338523..550338915
Molecular Weight (calculated)
14768.6 Da
IEP (calculated)
8.214
GRAVY (calculated)
-0.536
Length
130 amino acids
Sequence
(BLAST)
(BLAST)
001: MEPKEKPETT SAASPPPPRL DCIKCFDALW FCYTPLHQLQ TYYRHGDFDT CFGKWGDLVD CLSLKTKRRA EVEEILIARE KAKPHIWTFR TAEEAQANWW
101: QMYKHKVVMS SPPKTAGSAV PPPGSSGVLS
101: QMYKHKVVMS SPPKTAGSAV PPPGSSGVLS
001: MSSENEDSSS VRRRVSCTKC FDALWFCYSP FYQMQQYYRV GKLDDCTKKF SDLFDCLSLK TKRASEAERI LEEQEKAAAE KHIWIMRTQE EAVSHWNETF
101: GHLEDPNS
101: GHLEDPNS
Arabidopsis Description
At4g25315 [Source:UniProtKB/TrEMBL;Acc:Q147K0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.