Factsheet for VIT_12s0142g00160.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
cytosol 2
plastid 1
mitochondrion 4
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	mitochondrion
YLoc:	mitochondrion

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_04s0044g01040.t01
VIT_05s0020g03470.t01
VIT_05s0094g00440.t01
VIT_07s0031g01190.t01
VIT_15s0021g02140.t01
VIT_18s0001g10270.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G42870.1	VIT_05s0094g00440.t01	AT2G43650.1	21798944
AT2G42870.1	VIT_15s0021g02140.t01	AT2G44950.1	21798944
AT2G42870.1	VIT_05s0020g03470.t01	AT3G22440.1	21798944
AT2G42870.1	VIT_04s0044g01040.t01	AT4G00120.1	21798944
AT2G42870.1	VIT_07s0031g01190.t01	AT4G39690.1	21798944
AT2G42870.1	VIT_18s0001g10270.t01	AT5G67110.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g056360.1.1	Tomato	nucleus	28.48	41.35
CDY49257	Canola	plastid	30.46	39.66
Bra007422.1-P	Field mustard	plastid	30.46	39.66
PGSC0003DMT400044708	Potato	cytosol	28.48	39.45
AT3G58850.1	Thale cress	plastid	30.46	38.98
CDX71918	Canola	plastid	27.81	38.89
Bra014551.1-P	Field mustard	plastid	29.8	38.79
CDX89007	Canola	plastid	29.8	38.79
CDY00592	Canola	plastid	29.8	38.79
Bra004712.1-P	Field mustard	plastid	29.14	37.93
Bra016854.1-P	Field mustard	plastid	28.48	37.07
CDY14860	Canola	plastid	28.48	37.07
CDY68147	Canola	plastid	28.48	37.07
CDX83516	Canola	plastid	27.81	36.21
CDY50830	Canola	plastid	27.81	36.21
Bra000276.1-P	Field mustard	plastid	27.81	36.21
AT2G42870.1	Thale cress	plastid	27.81	35.59
CDY42818	Canola	plastid	26.49	34.19
KRH73670	Soybean	plastid	29.14	34.11
KRH14475	Soybean	nucleus	31.13	33.81

Protein Annotations

EntrezGene:100257469	wikigene:100257469	MapMan:35.2	ProteinID:CCB56398	ProteinID:CCB56398.1	UniProt:F6HNZ2
EMBL:FN595999	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	GO:GO:0046983	EntrezGene:LOC100257469	wikigene:LOC100257469	PANTHER:PTHR33124	PANTHER:PTHR33124:SF3
UniParc:UPI00015CA175	ArrayExpress:VIT_12s0142g00160	EnsemblPlantsGene:VIT_12s0142g00160	EnsemblPlants:VIT_12s0142g00160.t01	unigene:Vvi.19312	RefSeq:XP_002279838
RefSeq:XP_002279838.2	RefSeq:XP_002279838.3	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr12:+:144805..145328

Molecular Weight (calculated)

16907.4 Da

IEP (calculated)

7.045

GRAVY (calculated)

-0.530

Length

151 amino acids

Sequence
(BLAST)

001: MHIRKVIHTT SASTSAVSLY SLSKLCLQLC MEDTADNHPL AIGTFQRRER RQKPKSVKGV IRRKREHLKT EHKDDGGGGG GDEEDEEVEL EVEKKIMELQ
101: RIVPGGEWVG IENLFEQTAS YILALQCQVK AMNAVASFLE GLDMEKRKLG G

Best Arabidopsis Sequence Match ( AT2G42870.1 )
(BLAST)

001: MEETLATPDA TRRSLSPSCS ATVKSRAAGF ERRTKRRLSE TNASVREDRE EAEEEEDEVK EKIEALQRII PGGAALGVDA LFEETAGYIL SLQCQIKTIK
101: VLTSFLQRID QEDMKFGG

Arabidopsis Description

PAR1Transcription factor PAR1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SJH0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.