Factsheet for Bra004712.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000317.1-P
Bra000979.1-P
Bra004879.1-P
Bra010667.1-P
Bra011841.1-P
Bra012133.1-P
Bra023825.1-P
Bra030002.1-P
Bra036071.1-P
Bra040332.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G42870.1	Bra000317.1-P	AT2G43650.1	21798944
AT2G42870.1	Bra004879.1-P	AT2G44950.1	21798944
AT2G42870.1	Bra040332.1-P	AT2G44950.1	21798944
AT2G42870.1	Bra023825.1-P	AT3G22440.1	21798944
AT2G42870.1	Bra030002.1-P	AT3G50330.1	21798944
AT2G42870.1	Bra036071.1-P	AT3G50330.1	21798944
AT2G42870.1	Bra000979.1-P	AT4G00120.1	21798944
AT2G42870.1	Bra010667.1-P	AT4G39690.1	21798944
AT2G42870.1	Bra011841.1-P	AT4G39690.1	21798944
AT2G42870.1	Bra012133.1-P	AT5G67110.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY68147	Canola	plastid	99.14	99.14
CDY50830	Canola	plastid	96.55	96.55
Bra000276.1-P	Field mustard	plastid	89.66	89.66
Bra016854.1-P	Field mustard	plastid	88.79	88.79
AT2G42870.1	Thale cress	plastid	82.76	81.36
Bra014551.1-P	Field mustard	plastid	67.24	67.24
Bra007422.1-P	Field mustard	plastid	62.07	62.07
Solyc07g056360.1.1	Tomato	nucleus	43.97	49.04
PGSC0003DMT400044708	Potato	cytosol	41.38	44.04
KRH73670	Soybean	plastid	40.52	36.43
KRH14475	Soybean	nucleus	40.52	33.81
VIT_12s0142g00160.t01	Wine grape	mitochondrion	37.93	29.14

Protein Annotations

EnsemblPlants:Bra004712.1	EnsemblPlants:Bra004712.1-P	EnsemblPlantsGene:Bra004712	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	PANTHER:PTHR33124	PANTHER:PTHR33124:SF3	SEG:seg	UniParc:UPI0002547988	UniProt:M4CKH7
MapMan:15.5.32	:	:	:	:	:

Description

AT2G42870 (E=2e-038) PAR1, HLH1 | PAR1 (PHY RAPIDLY REGULATED 1)

Coordinates

chrA05:+:1480224..1480574

Molecular Weight (calculated)

12729.2 Da

IEP (calculated)

4.781

GRAVY (calculated)

-0.388

Length

116 amino acids

Sequence
(BLAST)

001: MEKTLATPDT TRSLSPSCSV AVESPAAGFE RRTKRRLSQT KASVCVSGEE DEDEEEVKEK IEALQRIIPG GTALGVDALF EETAGYIMSL QCQIKTIKVL
101: TSFLQRLDKQ DMKFGG

Best Arabidopsis Sequence Match ( AT2G42870.1 )
(BLAST)

001: MEETLATPDA TRRSLSPSCS ATVKSRAAGF ERRTKRRLSE TNASVREDRE EAEEEEDEVK EKIEALQRII PGGAALGVDA LFEETAGYIL SLQCQIKTIK
101: VLTSFLQRID QEDMKFGG

Arabidopsis Description

PAR1Transcription factor PAR1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SJH0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.